INTEGRALL

The Integron Database

Shigella dysenteriae 1
Accession Number: KT754161
Source: n.m.
Journal: Unpublished
Published: 19-MAR-2016
Title: Global phylogeography and evolutionary history of Shigella dysenteriae type 1
Authors: Njamkepo,E., Fawal,N., Tran-Dien,A., Hawkey,J., Strockbine,N., Jenkins,C., Talukder,K.A., Bercion,R., Kuleshov,K., Kolinska,R., Russe,J.E., Kaftyreva,L., Accou-Demartin,M., Karas,A., Vandenberg,O., Mather,A.E., Mason,C.J., Page,A.J., Ramamurthy,T., Bizet,C., Gamian,A., Carle,I., Sow,A.G., Bouchier,C., Wester,A.L., Lejay-Collin,M., Fonkoua,M.-C., Hello,S.L., Blaser,M.J., Jernberg,C., Ruckly,C., Merens,A., Page,A.-L., Aslett,M., Roggentin,P., Fruth,A., Denamur,E., Venkatesan,M., Bercovier,H., Bodhidatta,L., Chiou,C.-S., Clermont,D., Colonna,B., Egorova,S., Pazhani,G.P., Ezernitchi,A.V., Guigon,G., Harris,S.R., Izumiya,H., Korzeniowska-Kowal,A., Lutynska,A., Gouali,M., Grimont,F., Langendorf,C., Marejkova,M., Peterson,L.A., Perez-Perez,G., Ngandjio,A., Podkolzin,A., Souche,E., Makarova,M., Shipulin,G.A., Ye,C., Zemlickova,H., Herpay,M., Grimont,P.A., Parkhill,J., Sansonetti,P., Holt,K.E., Brisse,S., Thomson,N.R., Weill,F.-X.
Remarks: Class 1 integron. In1277
Promoter: PcH1
Gene Product Sequence
Transcriptional regulator2C TetR family (814..137)
tet(A) (893..2092)
tet(A) Tetracycline efflux protein TetA (893..2092)
Permease of the drug/metabolite transporter (DMT) superfamily (2906..2124)
TniA putative transposase (3307..2969)
Mobile element protein (6592..3587)
Mobile element protein (6756..7313)
blaTEM-1B (7496..8356)
blaTEM-1B BlaTEM-1B (7496..8356)
Mobile element protein (8742..8467)
Mobile element protein (9014..8787)
hypothetical protein (10401..9091)
pemK (11018..10686)
pemK Programmed cell death toxin PemK (11018..10686)
pemI (11277..11020)
pemI Programmed cell death antitoxin PemI (11277..11020)
microcin M activity protein McmM (12023..11370)
hypothetical protein (12142..12020)
hypothetical protein (12261..12121)
hypothetical protein (12493..12645)
RepA1 (13832..12963)
RepA1 RepA1 (13832..12963)
Replication regulatory protein repA2 (Protein copB) (14385..14125)
hypothetical protein (14565..14687)
hypothetical protein (14818..14669)
hypothetical protein (14874..15287)
hypothetical protein (15422..15294)
hypothetical protein (15665..15429)
hypothetical protein (16765..15752)
hypothetical protein (17180..16872)
hypothetical protein (17362..17177)
hypothetical protein (17886..17332)
hypothetical protein (18236..17883)
IncF plasmid conjugative transfer pilin acetylase TraX (19009..18278)
hypothetical protein (19395..19006)
hypothetical protein (19416..19547)
traI (24887..19590)
traI IncF plasmid conjugative transfer DNA-nicking and unwinding protein TraI (24887..19590)
traD (27118..24887)
traD IncF plasmid conjugative transfer protein TraD (27118..24887)
traT (27999..27262)
traT IncF plasmid conjugative transfer surface exclusion protein TraT (27999..27262)
hypothetical protein (28731..28174)
traG (31644..28741)
traG IncF plasmid conjugative transfer protein TraG (31644..28741)
traH (33007..31646)
traH IncF plasmid conjugative transfer pilus assembly protein TraH (33007..31646)
trbB (33615..33013)
trbB IncF plasmid conjugative transfer protein TrbB (33615..33013)
traF (34418..33639)
traF IncF plasmid conjugative transfer pilus assembly protein TraF (34418..33639)
traN (36253..34415)
traN IncF plasmid conjugative transfer protein TraN (36253..34415)
trbC (36864..36250)
trbC IncF plasmid conjugative transfer protein TrbC (36864..36250)
hypothetical protein (37010..36861)
traU (38225..37239)
traU IncF plasmid conjugative transfer pilus assembly protein TraU (38225..37239)
traW (38857..38222)
traW IncF plasmid conjugative transfer pilus assembly protein TraW (38857..38222)
trbI (39321..38857)
trbI IncF plasmid conjugative transfer protein TrbI (39321..38857)
traC (41909..39318)
traC IncF plasmid conjugative transfer pilus assembly protein TraC (41909..39318)
traV (42519..41920)
traV IncF plasmid conjugative transfer pilus assembly protein TraV (42519..41920)
hypothetical protein (42989..42579)
hypothetical protein (43158..42973)
hypothetical protein (43386..43162)
traB (44862..43498)
traB IncF plasmid conjugative transfer pilus assembly protein TraB (44862..43498)
traK (45589..44849)
traK IncF plasmid conjugative transfer pilus assembly protein TraK (45589..44849)
traE (46142..45579)
traE IncF plasmid conjugative transfer pilus assembly protein TraE (46142..45579)
traL (46467..46162)
traL IncF plasmid conjugative transfer pilus assembly protein TraL (46467..46162)
hypothetical protein (46828..46469)
hypothetical protein (47092..46925)
hypothetical protein (47588..47307)
IncF plasmid conjugative transfer mating signal transduction protein TraM (48452..47952)
hypothetical protein (48925..48803)
X polypeptide (48924..49376)
hypothetical protein (50086..49826)
hypothetical protein (50624..50382)
hypothetical protein (50946..50584)
Single-stranded DNA-binding protein (51099..50971)
hypothetical protein (51290..51673)
hypothetical protein (52322..51759)
putative plasmid protein (53730..52369)
YdaB (54012..53782)
YdaB YdaB (54012..53782)
hypothetical protein (54246..54109)
Single-stranded DNA-binding protein (54364..54236)
hypothetical protein (55000..54791)
hypothetical protein (55205..55014)
Adenine-specific methyltransferase (55624..55202)
Putative antirestriction protein (56096..55671)
hypothetical protein (56223..56393)
hypothetical protein (56506..56345)
hypothetical protein (57279..56509)
YcgB (57758..57324)
YcgB YcgB (57758..57324)
putative cytoplasmic protein (57993..57772)
Adenine-specific methyltransferase (58677..57994)
hypothetical protein (58784..58909)
hypothetical protein (59988..59062)
parB (60795..60373)
parB ParB (60795..60373)
Putative stability/partitioning protein (61778..60798)
hypothetical protein (62733..62167)
tetR (63237..63938)
tetR Transcriptional regulator2C TetR family (63237..63938)
hypothetical protein (63962..64192)
Putative signal peptide protein (64247..64537)
hypothetical protein (64569..65495)
Glutamate synthase NADPH large chain (65464..66222)
INTEGRAL MEMBRANE PROTEIN (Rhomboid family) (66224..66751)
hypothetical protein (66896..67042)
hypothetical protein (67446..67084)
hypothetical protein (67634..67443)
hypothetical protein (67653..67772)
hypothetical protein (67807..67920)
Peptide deformylase (68456..67947)
Mobile element protein (68984..69349)
Mobile element protein (69304..69816)
Mobile element protein (69910..70536)
Mobile element protein (71291..70926)
hypothetical protein (72668..71493)
Mobile element protein (75849..72883)
Transposon Tn21 resolvase (76412..75852)
Mobile element protein (76888..76538)
Integron integrase IntIPac (78104..77091)
dfrA15 (78261..78734)
dfrA15 DfrA15 (78261..78734)
Streptomycin 3''-O-adenylyltransferase (78836..79627)
emrE (79791..80138)
emrE Ethidium bromide-methyl viologen resistance protein EmrE (79791..80138)
sul1 (80132..80971)
sul1 Sul1 (80132..80971)
puromycin N-acetyltransferase-like protein (81099..81425)
Mobile element protein (81470..82588)