INTEGRALL

The Integron Database

Shigella dysenteriae 1
Accession Number: KT754167
Source: n.m.
Journal: Unpublished
Published: 19-MAR-2016
Title: Global phylogeography and evolutionary history of Shigella dysenteriae type 1
Authors: Njamkepo,E., Fawal,N., Tran-Dien,A., Hawkey,J., Strockbine,N., Jenkins,C., Talukder,K.A., Bercion,R., Kuleshov,K., Kolinska,R., Russe,J.E., Kaftyreva,L., Accou-Demartin,M., Karas,A., Vandenberg,O., Mather,A.E., Mason,C.J., Page,A.J., Ramamurthy,T., Bizet,C., Gamian,A., Carle,I., Sow,A.G., Bouchier,C., Wester,A.L., Lejay-Collin,M., Fonkoua,M.-C., Hello,S.L., Blaser,M.J., Jernberg,C., Ruckly,C., Merens,A., Page,A.-L., Aslett,M., Roggentin,P., Fruth,A., Denamur,E., Venkatesan,M., Bercovier,H., Bodhidatta,L., Chiou,C.-S., Clermont,D., Colonna,B., Egorova,S., Pazhani,G.P., Ezernitchi,A.V., Guigon,G., Harris,S.R., Izumiya,H., Korzeniowska-Kowal,A., Lutynska,A., Gouali,M., Grimont,F., Langendorf,C., Marejkova,M., Peterson,L.A., Perez-Perez,G., Ngandjio,A., Podkolzin,A., Souche,E., Makarova,M., Shipulin,G.A., Ye,C., Zemlickova,H., Herpay,M., Grimont,P.A., Parkhill,J., Sansonetti,P., Holt,K.E., Brisse,S., Thomson,N.R., Weill,F.-X.
Remarks: Class 1 integron. In2
Promoter: PcW+P2
Gene Product Sequence
putative cytoplasmic protein (337..116)
Adenine-specific methyltransferase (1021..338)
hypothetical protein (1128..1247)
Mobile element protein (2734..1718)
hypothetical protein (3068..2832)
hypothetical protein (3974..3072)
hypothetical protein (4222..4641)
Error-prone repair protein UmuD (4638..5075)
Error-prone2C lesion bypass DNA polymerase V (UmuC) (5075..5203)
putative phage integrase family (5274..6803)
hypothetical protein (6803..8653)
hypothetical protein (8650..10641)
hypothetical protein (10643..11083)
hypothetical protein (12298..11339)
hypothetical protein (13481..12300)
hypothetical protein (13836..14924)
Error-prone2C lesion bypass DNA polymerase V (UmuC) (15330..16511)
Chromosome (plasmid) partitioning protein ParA (16792..17325)
hypothetical protein (17445..17624)
hypothetical protein (18150..17986)
hypothetical protein (19505..18159)
hypothetical protein (19582..19701)
hypothetical protein (19858..20460)
hypothetical protein (20516..20983)
Mobile element protein (21004..21195)
Mercuric resistance operon regulatory protein (22385..21816)
Mercuric transport protein2C MerT (22322..22672)
Periplasmic mercury(+2) binding protein (22686..22961)
Mercuric transport protein2C MerC (22958..23419)
Mercuric ion reductase (23552..25165)
Mercuric resistance operon coregulator (25240..25545)
Mercuric transport protein2C MerE (25542..25778)
Tn21 protein of unknown function Urf2 (25775..26482)
TniA putative transposase (26593..28236)
TniB NTP-binding protein (28239..29099)
Mobile element protein (30694..29150)
Mobile element protein (30817..32340)
Mobile element protein (32330..33112)
sul1 (34755..33916)
sul1 sul1 (34755..33916)
Ethidium bromide-methyl viologen resistance protein EmrE (35096..34749)
Streptomycin 3''-O-adenylyltransferase (36165..35260)
Integron integrase IntIPac (36200..37213)
Mobile element protein (37416..37766)
Transposon Tn21 resolvase (37892..38452)
Mobile element protein (38455..41421)
YbjA (41686..41865)
YbjA YbjA protein (41686..41865)
catA1 (42725..42066)
catA1 catA1 (42725..42066)
Mobile element protein (43198..43701)
Mobile element protein (43729..44937)
Right origin-binding protein (45363..44947)
Transcriptional regulator2C TetR family (45451..46044)
tet(B (47380..46157)
tet(B tet(B) (47380..46157)
Transcriptional regulator2C ArsR family (48293..48045)
replication initiation protein (51212..50181)
hypothetical protein (51359..51547)
IncI1 plasmid conjugative transfer NusG-type transcription antiterminator TraB (51915..52553)
IncI1 plasmid conjugative transfer protein TraC (52591..53355)
hypothetical protein (53322..53468)
hypothetical protein (53622..53765)
hypothetical protein (53771..54088)
hypothetical protein (54515..54384)
IncI1 plasmid conjugative transfer protein PilL (54766..55836)
IncI1 plasmid conjugative transfer protein PilM (55840..56277)
IncI1 plasmid conjugative transfer lipoprotein PilN (56309..57928)
IncI1 plasmid pilus assembly protein PilO (57949..59244)
IncI1 plasmid pilus assembly protein PilP (59234..59692)
IncI1 plasmid conjugative transfer ATPase PilQ (59796..61304)
IncI1 plasmid conjugative transfer inner membrane protein PilR (61306..62400)
IncI1 plasmid conjugative transfer prepilin PilS (62462..62998)
IncI1 plasmid conjugative transfer putative membrane protein PilT (63043..63528)
Type-IV sectretion leader peptidase/N-methyltransferase (63544..64170)
IncI1 plasmid conjugative transfer pilus-tip adhesin protein PilV (64188..65549)
hypothetical protein (65783..65935)
IncI1 plasmid conjugative transfer protein TraE (66022..66843)
IncI1 plasmid conjugative transfer protein TraF (66945..68147)
hypothetical protein (68256..68137)
IncI1 plasmid conjugative transfer protein TraH (68251..68709)
IncI1 plasmid conjugative transfer protein TraI (68706..69542)
IncI1 plasmid conjugative transfer protein TraJ2C (69526..70674)
IncI1 plasmid conjugative transfer protein TraK (70671..70961)
IncI1 plasmid conjugative transfer DNA primase (71025..75086)
IncI1 plasmid conjugative transfer protein TraL (75103..75453)
IncI1 plasmid conjugative transfer protein TraM (75465..76160)
IncI1 plasmid conjugative transfer protein TraN (76171..77145)
IncI1 plasmid conjugative transfer protein TraO (77149..78486)
IncI1 plasmid conjugative transfer protein TraP (78483..79196)
IncI1 plasmid conjugative transfer protein TraQ (79196..79723)
IncI1 plasmid conjugative transfer protein TraR (79770..80168)
IncI1 plasmid conjugative transfer protein TraS (80192..80476)
IncI1 plasmid conjugative transfer protein TraT (80496..81209)
hypothetical protein (81438..81202)
IncI1 plasmid conjugative transfer protein TraU (81504..84548)
IncI1 plasmid conjugative transfer protein TraV (84548..85168)
IncI1 plasmid conjugative transfer protein TraW (85126..86331)
IncI1 plasmid conjugative transfer protein TraX (86432..86896)
IncI1 plasmid conjugative transfer integral membrane protein TraY (86971..89130)
surface exclusion protein (89218..89865)
hypothetical protein (89971..89816)
DNA-directed RNA polymerase2C sigma subunit (sigma70/sigma32) (90196..90354)
post-segregation killing protein (90644..90492)
hypothetical protein (90927..90808)
hypothetical protein (90896..91216)
hypothetical protein (91313..91504)
hypothetical protein (91501..91884)
hypothetical protein (91888..92103)
hypothetical protein (92981..92301)
putative nuclease (93084..93551)
hypothetical protein (93702..93878)
hypothetical protein (94228..93941)
hypothetical protein (94463..94329)
hypothetical protein (94440..94568)
TrbA (95293..96582)
TrbA TrbA (95293..96582)
TrbB (96579..97703)
TrbB TrbB protein (96579..97703)
hypothetical protein (97684..99873)
Mobile element protein (99949..100314)
Mobile element protein (100272..101177)
hypothetical protein (101189..101320)
hypothetical protein (104261..101541)
Nickel ABC transporter2C periplasmic nickel-binding protein NikA (104605..104273)
hypothetical protein (104732..104848)
hypothetical protein (104838..105173)
Z1226 (106107..105259)
Z1226 hypothetical protein (106107..105259)
hypothetical protein (106208..106651)
hypothetical protein (106685..106936)
hypothetical protein (107212..106967)
Mobile element protein (108126..107212)
CcgAII protein (108587..108123)
hypothetical protein (108624..108496)
YDFB (108955..108689)
YDFB YDFB protein (108955..108689)
hypothetical protein (109482..109048)
hypothetical protein (109588..109713)
hypothetical protein (109722..110075)
hypothetical protein (110231..110088)
Antirestriction protein ArdA (110730..110215)
hypothetical protein (110795..111016)
Eaa (111778..111182)
Eaa Eaa protein (111778..111182)
PsiA (112494..111775)
PsiA PsiA protein (112494..111775)
PsiB (112928..112491)
PsiB PsiB protein (112928..112491)
hypothetical protein (114944..112980)
hypothetical protein (115230..114997)
Single-stranded DNA-binding protein (115815..115288)
hypothetical protein (116570..116199)
hypothetical protein (116775..116584)
Adenine-specific methyltransferase (117194..116772)
Putative antirestriction protein (117666..117241)
hypothetical protein (118084..117914)
hypothetical protein (118554..118081)
hypothetical protein (118850..118524)
hypothetical protein (119214..118921)