INTEGRALL

The Integron Database

Escherichia coli
Accession Number: LO017737
Source: n.m.
Journal: Unpublished
Published: 10-JUN-2016
Title: Distribution and role of the arginine deiminase operon among extended- spectrum beta-lactamases encoding strains of Escherichia coli
Authors: Billard-Pomares,T., Castellanos,M., Magdoud,F., Bleibtreu,A., Fouteaud,S., Barbe,V., Roche,D., Cruveiller,S., Medigue,C., Pognard,D., Dion,S., Rigal,O., Picard,B., Clermont,O., Denamur,E., Branger,C.
Remarks: Class 1 integron. In54
Promoter: PcH1
Gene Product Sequence
(1..288)
conserved hypothetical protein (1..288)
(406..1227)
conserved hypothetical protein (406..1227)
yubQ (2126..1524)
yubQ transglycosylase SLT domain-containing proteinX polypeptide (2126..1524)
traM (2447..2830)
traM Protein TraM (Conjugal transfer protein M) (2447..2830)
(2912..3016)
traJ_5 (2912..3016)
(3016..2945)
FinP (3016..2945)
traJ (3017..3706)
traJ Protein TraJ (Positive regulator of conjugal transfer operon) (3017..3706)
traY (3805..4200)
traY Protein TraY (Conjugative transfer: oriT nicking) (3805..4200)
traA (4233..4598)
traA Fimbrial protein precursor TraA (Pilin) (4233..4598)
traL (4613..4924)
traL F pilus assembly protein TraL (4613..4924)
traE (4946..5512)
traE F pilus assembly protein TraE (4946..5512)
traK (5499..6227)
traK F pilus assembly protein TraK (5499..6227)
traB (6227..7654)
traB F pilus assembly protein TraB (6227..7654)
traP (7644..8234)
traP conjugal transfert protein TraP (7644..8234)
trbD (8221..8418)
trbD Conserved hypothetical protein TrbD (8221..8418)
trbG (8430..8681)
trbG conserved protein of unknown function TrbG (8430..8681)
traV (8678..9205)
traV F pilus assembly protein TraV (8678..9205)
insB (9643..9140)
insB transposase InsB of IS1 (9643..9140)
InsA (9837..9562)
InsA Transposase InsA, IS1 (9837..9562)
traR (10105..10326)
traR putative conjugal transfer protein TraR (10105..10326)
traC (10486..13113)
traC F pilus assembly protein TraC (10486..13113)
trbI (13110..13496)
trbI F pilus extension/retraction protein TrbI (13110..13496)
traW (13493..14125)
traW F pilus assembly protein TraW (13493..14125)
traU (14122..15114)
traU Pilus assembly protein TraU (14122..15114)
trbC (15120..15761)
trbC F pilus assembly protein TrbC (15120..15761)
traN (15758..17566)
traN mating contact stabilization protein TraN (15758..17566)
trbE (17590..17850)
trbE Conjugal transfer protein TrbE (17590..17850)
traF (17813..18586)
traF F pilus assembly protein TraF (17813..18586)
artA (19257..18922)
artA Putative membrane protein ArtA (19257..18922)
traQ (19338..19622)
traQ F pilin synthesis protein TraQ (19338..19622)
trbB (19609..20163)
trbB Thiol-disulfide bond isomerase TrbB (19609..20163)
trbJ (20153..20467)
trbJ conjugal transfer protein TrbJ (20153..20467)
trbF (20421..20813)
trbF Conjugal transfer protein TrbF (20421..20813)
traH (20797..22173)
traH F pilus assembly protein TraH (20797..22173)
traG (22170..24995)
traG mating contact stabilization protein TraG (22170..24995)
traS (24992..25501)
traS conjugal transfer entry exclusion protein TraS (24992..25501)
traT (25515..26246)
traT complement resistance and surface exclusion outer membrane protein TraT (25515..26246)
traD (26498..28705)
traD conjugal transfer coupling protein TraD (26498..28705)
traI (28705..33825)
traI OriT nicking and unwinding protein TraI (DNA helicase I) (28705..33825)
traX (33845..34591)
traX F pilin acetylase TraX (33845..34591)
finO (34646..35206)
finO Fertility inhibition protein FinO (Conjugal transfer repressor) (34646..35206)
insB (35942..35853)
insB transposase InsB of IS1 (part 2) (35942..35853)
(36027..36674)
Transposase OrfA of ISCro1, IS66 family (36027..36674)
(36674..37021)
Transposase OrfB of ISCro1, IS66 Family (36674..37021)
(37041..38612)
Transposase OrfC of ISCro1, IS66 family (37041..38612)
insB (39072..38533)
insB Transposase InsB of IS1 (part 1) (39072..38533)
insA (39266..38991)
insA transposase InsA of IS1 (39266..38991)
(39367..39549)
conserved protein of unknown function (39367..39549)
srnB (39736..39942)
srnB toxin antitoxin system protein SrnB (39736..39942)
repA2 (40226..40483)
repA2 Replication regulatory protein RepA2 (40226..40483)
(40700..40611)
CopA (40700..40611)
repA1 (40785..41237)
repA1 Replication initiation protein RepA1 (truncated) (40785..41237)
(41462..41343)
conserved protein of unknown function (41462..41343)
(41710..41465)
conserved exported protein of unknown function (41710..41465)
arcA (42552..43772)
arcA Arginine deiminase (42552..43772)
arcC (43783..44694)
arcC Carbamate kinase (43783..44694)
arcB (44779..45783)
arcB Ornithine carbamoyltransferase (44779..45783)
arcD (45831..47234)
arcD ArcD protein, C4-dicarboxylate anaerobic carrier (45831..47234)
argR (47315..47794)
argR Arginine repressor (47315..47794)
(48043..47858)
Transposase OrfC ISEc23, IS66 family (fragment) (48043..47858)
(48321..48151)
Transposase OrfC ISEc23, IS66 family (fragment) (48321..48151)
(48753..48403)
Transposase OrfB ISEc23, IS66 family (48753..48403)
(49169..48750)
Transposase OrfA ISEc23, IS66 family (49169..48750)
insB (49722..49219)
insB transposase InsB of IS1 (49722..49219)
insA (49916..49641)
insA transosase InsA of IS1 (49916..49641)
yihA (50033..50527)
yihA cconserved protein of unknown function YihA, partial (50033..50527)
(51293..50940)
conserved protein of unknown function (51293..50940)
(52787..51765)
transposase, IS110 family (52787..51765)
repA2 (53192..53449)
repA2 Replication regulatory protein RepA2 (53192..53449)
(53665..53576)
CopA (53665..53576)
repA1 (53750..54607)
repA1 Replication initiation protein RepA1 (53750..54607)
repA4 (54970..55356)
repA4 Protein repA4 (54970..55356)
(55546..56199)
CAAX amino terminal protease, Tir protein (55546..56199)
pemI (56292..56549)
pemI Plasmid stable inheritance repressor protein, antitoxin PemI (56292..56549)
pemK (56551..56883)
pemK mRNA interferase PemK (toxin protein) (56551..56883)
tnpA (59917..57020)
tnpA transposase for transposon Tn501 (59917..57020)
tnpR (60012..60617)
tnpR resolvase Tn501 (60012..60617)
tnpA (61435..60614)
tnpA transposase for transposon Tn1721(partial) (61435..60614)
pecM (61924..62808)
pecM Protein PecM (61924..62808)
tetA (64039..62840)
tetA Tetracycline resistance protein, class A (64039..62840)
tetR (64118..64795)
tetR Tetracycline repressor protein class A from transposon 1721 (64118..64795)
(65069..64827)
protein of unknown function (65069..64827)
tnpA (66640..65111)
tnpA Transposase of transposon Tn1721 (Fragment) (66640..65111)
tnpA IS26 (66691..67395)
tnpA IS26 transposase of IS26, IS6 family (66691..67395)
aacA (67494..68093)
aacA Aminoglycoside N(6')-acetyltransferase type 1 (67494..68093)
bla OXA-1 (68461..69054)
bla OXA-1 Beta-lactamase OXA-1 (68461..69054)
cat (69192..69740)
cat chloramphenicol acetyltransferase (69192..69740)
tnpA IS26 (70390..69686)
tnpA IS26 transposase of IS26, IS6 family (70390..69686)
(70456..70743)
transposase of ISEcp1 (fragment) (70456..70743)
blaCTX-M-15 (70999..71874)
blaCTX-M-15 Beta-lactamase CTX-M-15 (70999..71874)
orf477 (72253..71921)
orf477 ORF477, cupin fold metalloprotein, WbuC family (72253..71921)
tnpA (72513..74528)
tnpA transposase of transposon Tn2 (fragment) (72513..74528)
tnpA IS26 (74575..75279)
tnpA IS26 transposase of IS26, IS6 family (74575..75279)
(75515..77023)
Group II intron-encoded reverse transcriptase/maturase (75515..77023)
(77027..77113)
Intron_gpII (77027..77113)
(77140..77586)
transposase OrfB, IS629, IS3 family (fragment) (77140..77586)
(78206..77589)
putative autotransporter barrel domain-containing protein (78206..77589)
insH (78260..78979)
insH transposase of IS5 (part 1) (78260..78979)
(78874..78942)
protein of unknown function (78874..78942)
(78961..79176)
transposase of IS5 (part 2) (78961..79176)
(80286..79534)
alpha/beta hydrolase (80286..79534)
(80528..81400)
putative drug/metabolite transporter (DMT) superfamily (80528..81400)
(81531..82754)
Putative aminotransferase (81531..82754)
(83713..82940)
Glucose-1-dehydrogenase (83713..82940)
(84480..83779)
putative dithiol-disulfide isomerase (84480..83779)
(85652..84546)
putative N-ethylmaleimide reductase (85652..84546)
(85866..86195)
Thioredoxin (85866..86195)
(86563..86225)
putative carboxymuconolactone decarboxylase (86563..86225)
(87149..86568)
Transcriptional regulator (87149..86568)
(87848..87291)
osmotically inducible protein like protein (87848..87291)
(88512..88033)
Resolvase (88512..88033)
tnpA IS26 (89269..88565)
tnpA IS26 transposase of IS26, IS6 family (89269..88565)
intl1 (90662..89649)
intl1 Class I integrase IntI1 (90662..89649)
dhfr17 (90592..91293)
dhfr17 Dihydrofolate reductaseDfr17 (90592..91293)
aadA5 (91424..92212)
aadA5 Streptomycin 3''-adenylyltransferase (91424..92212)
qacEdelta1 (92418..92765)
qacEdelta1 quaternary ammonium compound-resistance protein (92418..92765)
sulI (92732..93598)
sulI Dihydropteroate synthase type-1 (92732..93598)
(93726..93929)
conserved protein of unknown function (93726..93929)
(94085..95290)
Chromate ion transporter (CHR) family (94085..95290)
padB (95301..95606)
padB Transcriptional regulator, PadR family (95301..95606)
tnpA (95833..96597)
tnpA transposase of IS6100 (95833..96597)
(97081..96788)
conserved protein of unknown function (97081..96788)
mphR (97674..97090)
mphR macrolide 2'-phosphotransferase I repressor A (97674..97090)
mrx (98912..97674)
mrx Macrolide resistance protein Mrx (98912..97674)
mphA (99814..98909)
mphA Macrolide 2'-phosphotransferase I (99814..98909)
(100303..99818)
transposase ORF B OF IS629 (fragment) (100303..99818)
(100629..100303)
transposase ORF A of IS629, IS3 family (100629..100303)
(100694..100960)
transposase IS1294,IS91 family (fragment) (100694..100960)
senB (102658..101483)
senB Enterotoxin TieB protein (102658..101483)
cjrC (104988..102727)
cjrC Colicin Js-sensitive receptor protein (104988..102727)
cjrB (105933..105157)
cjrB colicin Js sensitivity (105933..105157)
cjrA (106816..105941)
cjrA conserved hypothetical protein, putative iron-regulated protein cjrA (106816..105941)
rep (107714..107148)
rep replication initiator protein (107714..107148)
imm (109621..109286)
imm Colicin-Ia immunity protein (109621..109286)
(109750..110097)
conserved hypothetical protein YbaA (109750..110097)
(110686..110117)
conserved protein of unknown function (110686..110117)
(110943..110683)
conserved hypothetical protein (110943..110683)
(111045..111371)
transposase OrfA of IS629, IS3 family (111045..111371)
(111371..112168)
transposase OrfB of IS629, IS3 family (111371..112168)
(112197..112601)
transposase ORF 1 of ISEc22, IS66 family (112197..112601)
tnpA IS26 (113374..112670)
tnpA IS26 transposase of IS26, IS6 family (113374..112670)
(113480..113773)
transposase Orf2 of ISEc22, IS66 family (113480..113773)
(113822..114079)
fragment of transposase orf3 of ISEc22, IS66 family (part 1) (113822..114079)
(114081..114839)
Fragment of transposase ORF3 of ISEc22, IS66 family (part 2) (114081..114839)
(114853..115875)
transposase ORFA of IS100, IS21 family (114853..115875)
(115875..116654)
transposase ORF B, IS100, IS21 family (115875..116654)
(116812..117006)
Fragment of transposase Orf3 of ISEc22, IS66 family protein (part 3) (116812..117006)
(117073..117720)
Transposase OrfA of ISCro1, IS66 family (117073..117720)
(117720..118067)
Transposase orfB of ISCro1, IS66 family (117720..118067)
(118087..119658)
Transposase OrfC of ISCro1, IS66 family (118087..119658)
(119690..120037)
Fragment of transposase Orf3 ISEc22, IS66 family protein (part 4) (119690..120037)
(120891..120100)
putative ABC-type Co2+ transport system (120891..120100)
(122868..120898)
Hemin receptor (122868..120898)
(123150..123515)
transposase ORFA of IS2 (123150..123515)
(126399..125230)
conserved hypothetical protein; putative membrane protein (126399..125230)
int (127075..127815)
int site-specific recombinase (127075..127815)
repA (129077..128100)
repA RepFIB replication protein RepA (129077..128100)
(129353..129601)
conserved protein of unknown function (129353..129601)
(129823..130179)
transposase of IS21 (fragment) (129823..130179)
(130494..130826)
DNA polymerase V subunit UmuC (fragment) (130494..130826)
insB (131509..131006)
insB transposase InsB of IS1 (131509..131006)
insA (131703..131428)
insA transposase InsA (131703..131428)
sitA (132059..132973)
sitA SitA protein, iron transport protein (132059..132973)
sitB (132973..133800)
sitB iron transport protein, ATP-binding component (132973..133800)
sitC (133797..134654)
sitC SitC protein, iron transport protein, inner membrane component (133797..134654)
sitD (134651..135508)
sitD SitD protein, Iron transport protein (134651..135508)
(135976..136410)
enolase (135976..136410)
shiF (138704..137511)
shiF putative membrane transport protein ShiF (138704..137511)
iucA (138840..140564)
iucA Aerobactin siderophore biosynthesis protein IucA (138840..140564)
iucB (140565..141512)
iucB N(6)-hydroxylysine acetylase IucB (140565..141512)
iucC (141512..143254)
iucC Aerobactin siderophore biosynthesis protein IucC (141512..143254)
iucD (143251..144528)
iucD L-lysine 6-monooxigenase IucD (143251..144528)
iutA (144613..146811)
iutA Ferric aerobactin receptor precusor IutA (144613..146811)
insA (147337..147612)
insA transposase InsA of IS1 (147337..147612)
insB (147531..148034)
insB transposase InsB of IS1 (147531..148034)
(149310..148288)
conserved protein of unknown function (149310..148288)
(150860..149295)
Putative ATP-dependent endonuclease (150860..149295)
vagD (151351..150935)
vagD toxin of antitoxin system protein VagD (151351..150935)
vagC (151578..151348)
vagC antitoxin protein VagC (151578..151348)
ccdA (152138..152356)
ccdA Antitoxin CcdA (152138..152356)
ccdB (152358..152663)
ccdB Cytotoxic protein (toxin antitoxin system) (152358..152663)
resD (152664..153470)
resD resolvase protein ResD (152664..153470)
repE (154192..154947)
repE Replication initiation protein, FIA (154192..154947)
sopA (155535..156701)
sopA SopA protein (Plasmid partition protein A) (155535..156701)
sopB (156701..157672)
sopB SopB protein (Plasmid partition protein B) (156701..157672)
(158386..159312)
conserved hypothetical protein (158386..159312)
(159697..160380)
Site-specific DNA-methyltransferase (159697..160380)
(160381..160602)
conserved protein of unknown function (160381..160602)
(160616..161050)
conserved hypothetical protein (160616..161050)
(161095..161865)
conserved hypothetical protein (161095..161865)
(162153..161983)
conserved protein of unknown function (162153..161983)
(162279..162704)
antirestriction protein (162279..162704)
(162751..163173)
conserved hypothetical protein (162751..163173)
(163170..163361)
conserved hypothetical protein (163170..163361)
(164393..164623)
conserved protein of unknown function (164393..164623)
(164675..166036)
conserved hypothetical protein (164675..166036)
(166084..166440)
fragment of putative adenine-specific DNA methylase (part 1) (166084..166440)
(166398..166649)
fragment of putative adenine-specific DNA methylase (part 2) (166398..166649)
(166649..166813)
conserved protein of unknown function (166649..166813)
(168181..170082)
Retron-type RNA-directed DNA polymerase (168181..170082)
(170108..170228)
Intron_gpII (170108..170228)
ssb (170232..170729)
ssb Single-stranded DNA-binding protein (170232..170729)
(170797..171030)
conserved hypothetical protein (170797..171030)
(171121..171255)
conserved protein of unknown function (171121..171255)
psiB (171310..171744)
psiB Plasmid SOS inhibition protein B (171310..171744)
psiA (171741..172460)
psiA Plasmid SOS inhibition protein A (171741..172460)
sok (172618..172472)
sok antitoxin Sok (part 2) (172618..172472)
(172717..173238)
transposase ORFA of IS150, IS3 family (172717..173238)
insK (173235..174086)
insK transposase OrfB of IS150, IS3 family (173235..174086)
sok (174142..174113)
sok antitoxin Sok (part 1) (174142..174113)
mok (174128..174340)
mok modulator protein MoK (174128..174340)
hok (174186..174344)
hok toxin HoK (174186..174344)