INTEGRALL
The Integron Database
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Discussion Groups
Forum MGE
Mobile Genetic Elements
ACLAME - A Classification of Mobile Genetic Elements
Gypsy - Virus Database
ISCR Elements
ISFINDER - Insertion Sequences Reference Centre
ISsaga - Semi-Automatic IS Annotation
MITE Hunter
Mobile Group II Introns Database
Plasmid MLST Database
RAC - Repository of Antibiotic Resistance Cassettes
Transposon Registry
Antibiotic Resistance
ARDB - Antibiotic Resistance Database
Beta-Lactamase Classification
Compreensive Antibiotic Resistance Database
Tetracycline and MLS Resistance Determinants Nomenclature
qnr
Classification
Pathogens & Virulence
GeneDB - Annotation Database for Pathogens
PATRIC - PathoSystems Resource Integration Centre
VFDR - Virulence Factors Database
Genomes & Comparative Genomics
BASys - Bacterial Annotation System
BIGSdb - Bacterial Isolate Genome Sequence Database
EBI Genomes
EcoCyc -
E. coli
K-12 Database
ENSEMBL
GFam - Automatic Annotation of Gene Families
GOLD - Genomes Online Database
IGS Genome Annotation Engine
IntPath - Integrated Pathway Gene Relationship Database
MBGD - Microbial Genome Database
RAST - Annotation of Prokaryotic Genomes
VISTA - Tools for Comparative Genomics
xBASE2 - Resources for Comparative Bacterial Genomics
Motifs & Regulators
IRF – Inverted Repeat Finder
ORFinder
Promoters & Terminators
PePPER - Prediction of Prokaryote Promoter Elements
PFAM - Protein Families Database
RepeatFinder
SoftBerry Motif Predictors
SMART - Simple Modular Architecture Research Tool
Transcription Factor Encyclopedia
Zebra - functional identification of amino acid residues
Other Tools
BLAST NCBI
BLAST UniProt
Clustal Omega
ExPASy Translate Tool
MEROPS – Peptidase Database
NEBCutter - Restriction Analysis
Oligo Calculator
Primer3 - Primer Picking
Reverse Complement