INTEGRALL

The Integron Database


USEFUL LINKS


Discussion Groups

  • Forum MGE


  • Mobile Genetic Elements

  • ACLAME - A Classification of Mobile Genetic Elements
  • Gypsy - Virus Database
  • ISCR Elements
  • ISFINDER - Insertion Sequences Reference Centre
  • ISsaga - Semi-Automatic IS Annotation
  • MITE Hunter
  • Mobile Group II Introns Database
  • Plasmid MLST Database
  • RAC - Repository of Antibiotic Resistance Cassettes
  • Transposon Registry


  • Antibiotic Resistance

  • ARDB - Antibiotic Resistance Database
  • Beta-Lactamase Classification
  • Compreensive Antibiotic Resistance Database
  • Tetracycline and MLS Resistance Determinants Nomenclature
  • qnr Classification


  • Pathogens & Virulence

  • GeneDB - Annotation Database for Pathogens
  • PATRIC - PathoSystems Resource Integration Centre
  • VFDR - Virulence Factors Database


  • Genomes & Comparative Genomics

  • BASys - Bacterial Annotation System
  • BIGSdb - Bacterial Isolate Genome Sequence Database
  • EBI Genomes
  • EcoCyc - E. coli K-12 Database
  • ENSEMBL
  • GFam - Automatic Annotation of Gene Families
  • GOLD - Genomes Online Database
  • IGS Genome Annotation Engine
  • IntPath - Integrated Pathway Gene Relationship Database
  • MBGD - Microbial Genome Database
  • RAST - Annotation of Prokaryotic Genomes
  • VISTA - Tools for Comparative Genomics
  • xBASE2 - Resources for Comparative Bacterial Genomics


  • Motifs & Regulators

  • IRF – Inverted Repeat Finder
  • ORFinder
  • Promoters & Terminators
  • PePPER - Prediction of Prokaryote Promoter Elements
  • PFAM - Protein Families Database
  • RepeatFinder
  • SoftBerry Motif Predictors
  • SMART - Simple Modular Architecture Research Tool
  • Transcription Factor Encyclopedia
  • Zebra - functional identification of amino acid residues


  • Other Tools

  • BLAST NCBI
  • BLAST UniProt
  • Clustal Omega
  • ExPASy Translate Tool
  • MEROPS – Peptidase Database
  • NEBCutter - Restriction Analysis
  • Oligo Calculator
  • Primer3 - Primer Picking
  • Reverse Complement