INTEGRALL

The Integron Database

Escherichia coli
Accession Number: CP000971
Source: n.m.
Journal: J. Bacteriol. 190 (20), 6779-6794 (2008)
Published: 20-MAR-2008
Title: Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5
Authors: Fricke,W.F., Wright,M.S., Lindell,A.H., Harkins,D.M., Baker-Austin,C., Ravel,J., Stepanauskas,R.
Remarks: pSMS35_130
Gene Product Sequence
(540..154)
replication initiation protein repA4 (540..154)
repA1 (1773..904)
repA1 IncFII replication initiation protein RepA1 (1773..904)
repA2 (2314..2054)
repA2 replication regulatory protein RepA2 (2314..2054)
(3126..2553)
(3373..3164)
conserved hypothetical protein (3373..3164)
(3880..3419)
staphylococcal nuclease homologue (3880..3419)
(4335..4123)
conserved hypothetical protein (4335..4123)
finO (5084..4473)
finO fertility inhibition protein FinO (5084..4473)
traX (5834..5088)
traX type IV secretion-like conjugative transfer system pilin acetylase TraX (5834..5088)
traI (11124..5854)
traI type IV secretion-like conjugative transfer relaxase protein TraI (11124..5854)
traD (13295..11124)
traD type IV secretion-like conjugative transfer system coupling protein TraD (13295..11124)
traT (14279..13548)
traT type IV secretion-like conjugative transfer system complement resistance protein TraT (14279..13548)
(14808..14311)
putative type IV secretion-like conjugative transfer system protein TraS (14808..14311)
traG (17651..14829)
traG type IV secretion-like conjugative transfer system protein TraG (17651..14829)
traH (19024..17648)
traH type IV secretion-like conjugative transfer system pilus assembly protein TraH (19024..17648)
trbJ (19383..19021)
trbJ type IV secretion-like conjugative transfer system protein TrbJ (19383..19021)
trbB (19858..19313)
trbB type IV secretion-like conjugative transfer system pilus assembly thiol-disulfide isomerase TrbB (19858..19313)
traQ (20129..19845)
traQ type IV secretion-like conjugative transfer system pilin chaperone TraQ (20129..19845)
trbA (20595..20248)
trbA type IV secretion-like conjugative transfer system protein TrbA (20595..20248)
traF (21354..20611)
traF type IV secretion-like conjugative transfer system pilus assembly protein TraF (21354..20611)
trbE (21604..21347)
trbE type IV secretion-like conjugative transfer system protein TrbE (21604..21347)
traN (23439..21631)
traN type IV secretion-like conjugative transfer system mating-pair stabilization protein TraN (23439..21631)
trbC (24074..23436)
trbC type IV secretion-like conjugative transfer system pilus assembly protein TrbC (24074..23436)
(24554..24102)
hypothetical protein (24554..24102)
(25045..24584)
hypothetical protein (25045..24584)
traU (26063..25071)
traU type IV secretion-like conjugative transfer system protein TraU (26063..25071)
traW (26692..26060)
traW type IV secretion-like conjugative transfer system protein TraW (26692..26060)
trbI (27075..26689)
trbI type IV secretion-like conjugative transfer system protein TrbI (27075..26689)
traC (29699..27072)
traC type IV secretion-like conjugative transfer system protein TraC (29699..27072)
traR (30080..29859)
traR type IV secretion-like conjugative transfer system protein TraR (30080..29859)
traV (30730..30215)
traV type IV secretion-like conjugative transfer system protein TraV (30730..30215)
(30978..30727)
putative type IV secretion-like conjugative transfer system protein TrbG (30978..30727)
(31292..30975)
putative type IV secretion-like conjugative transfer system protein TrbD (31292..30975)
traP (31861..31289)
traP type IV secretion-like conjugative transfer system protein TraP (31861..31289)
traB (33278..31851)
traB type IV secretion-like conjugative transfer system protein TraB (33278..31851)
traK (34006..33278)
traK type IV secretion-like conjugative transfer system secretin TraK (34006..33278)
traE (34559..33993)
traE type IV secretion-like conjugative transfer system protein TraE (34559..33993)
traL (34892..34581)
traL type IV secretion-like conjugative transfer system protein TraL (34892..34581)
traA (35266..34907)
traA type IV secretion-like conjugative transfer system pilin TraA (35266..34907)
traY (35527..35300)
traY type IV secretion-like conjugative transfer system protein TraY (35527..35300)
traJ (36307..35621)
traJ type IV secretion-like conjugative transfer system regulator TraJ (36307..35621)
traM (36881..36498)
traM type IV secretion-like conjugative transfer system protein TraM (36881..36498)
(37158..37805)
transglycosylase SLT domain protein (37158..37805)
(37965..37831)
hypothetical protein (37965..37831)
(38923..38102)
conserved hypothetical protein (38923..38102)
(39333..39046)
conserved hypothetical protein (39333..39046)
(39519..39358)
hypothetical protein (39519..39358)
(39812..39600)
hypothetical protein (39812..39600)
(39957..39805)
hypothetical protein (39957..39805)
hok (40413..40255)
hok stable plasmid inheritance protein Hok (40413..40255)
(40693..40556)
hypothetical protein (40693..40556)
psiA (41412..40693)
psiA plasmid SOS inhibition protein PsiA (41412..40693)
psiB (41843..41409)
psiB plasmid SOS inhibition protein PsiB (41843..41409)
(43862..41898)
ParB-like partition protein (43862..41898)
(44148..43915)
conserved hypothetical protein (44148..43915)
ssb1 (44731..44204)
ssb1 plasmid-derived single-stranded DNA-binding protein (44731..44204)
(45622..45374)
hypothetical protein (45622..45374)
(46185..45622)
conserved hypothetical protein (46185..45622)
(47592..46231)
conserved hypothetical protein (47592..46231)
(47874..47644)
conserved hypothetical protein (47874..47644)
(48137..48394)
hypothetical protein (48137..48394)
(48738..48448)
hypothetical protein (48738..48448)
(49050..48868)
conserved hypothetical protein (49050..48868)
(49421..49050)
conserved hypothetical protein (49421..49050)
(49936..49511)
putative antirestriction protein (49936..49511)
(50016..50186)
hypothetical protein (50016..50186)
(50338..51309)
IS110 family transposase (50338..51309)
(51865..51362)
IS1 transposase orfB (51865..51362)
(52088..51876)
IS1 transposase orfA (52088..51876)
(52657..52514)
hypothetical protein (52657..52514)
(53036..52623)
hypothetical protein (53036..52623)
sopB (54635..53664)
sopB plasmid partition protein SopB (54635..53664)
sopA (55810..54635)
sopA plasmid partition protein SopA (55810..54635)
(56604..56101)
IS1 transposase orfB (56604..56101)
(56827..56615)
IS1 transposase orfA (56827..56615)
(58456..56954)
conserved hypothetical protein (58456..56954)
(59481..59056)
hypothetical protein (59481..59056)
(59638..60102)
hypothetical protein (59638..60102)
(60372..60178)
hypothetical protein (60372..60178)
(60602..60793)
hypothetical protein (60602..60793)
sitD_1 (62243..61386)
sitD_1 iron/manganese transport system membrane protein SitD (62243..61386)
sitC_1 (63097..62240)
sitC_1 iron/manganese transport system membrane protein SitC (63097..62240)
sitB_1 (63921..63094)
sitB_1 iron/manganese transport system membrane protein SitB (63921..63094)
sitA_1 (64835..63921)
sitA_1 iron/manganese transport system periplasmic binding protein SitA (64835..63921)
(65162..65374)
IS1 transposase orfA (65162..65374)
(65385..65888)
IS1 transposase orfB (65385..65888)
(66457..66068)
(67071..66715)
(67112..67288)
hypothetical protein (67112..67288)
(67356..67667)
conserved hypothetical protein (67356..67667)
(67680..67862)
hypothetical protein (67680..67862)
(67787..68533)
integrase core domain protein (67787..68533)
(68778..68554)
hypothetical protein (68778..68554)
(68915..69085)
hypothetical protein (68915..69085)
repA (69078..70055)
repA repFIB replication protein A (69078..70055)
(71080..70340)
site-specific recombinase (71080..70340)
(72671..71763)
Mig-14 family protein (72671..71763)
hlyF (73843..72734)
hlyF hemolysin F (73843..72734)
ompT (75229..74276)
ompT outer membrane protease 7 (75229..74276)
(75333..75722)
hypothetical protein (75333..75722)
(76844..77170)
IS629 transposase orfA (76844..77170)
(77170..78057)
IS629 transposase orfB (77170..78057)
(78501..78713)
IS1 transposase orfA (78501..78713)
(78724..79227)
IS1 transposase orfB (78724..79227)
(80400..80119)
hypothetical protein (80400..80119)
(80591..80740)
(80904..80758)
(80919..81329)
IS2 transposase orfA (80919..81329)
(81287..82192)
IS2 transposase orfB (81287..82192)
(82672..82163)
cma (82865..83680)
cma colicin-M (82865..83680)
cmi (84155..83730)
cmi colicin-M immunity protein Cmi (84155..83730)
resD (85037..84261)
resD resolvase (85037..84261)
(85348..85049)
hypothetical protein (85348..85049)
(85355..86077)
IS26 transposase (85355..86077)
(86840..87562)
IS26 transposase (86840..87562)
cmlA (88347..87706)
cmlA chloramphenicol acetyltransferase 2 (88347..87706)
(88997..88497)
conserved hypothetical protein (88997..88497)
(89059..89781)
IS26 transposase (89059..89781)
(91242..90229)
integrase/recombinase (91242..90229)
dhfrV (91389..91871)
dhfrV dihydrofolate reductase type 5 (91389..91871)
(91923..92645)
IS26 transposase (91923..92645)
(92693..93013)
(93016..95982)
Tn3 family transposase (93016..95982)
(96061..97065)
IS5075 transposase (96061..97065)
(97562..97744)
conserved hypothetical protein (97562..97744)
sul2 (97753..98568)
sul2 dihydropteroate synthase type-2 (97753..98568)
strA (98629..99432)
strA aminoglycoside resistance protein A (98629..99432)
strB (99438..100268)
strB aminoglycoside resistance protein B (99438..100268)
blaT (101359..100499)
blaT beta-lactamase TEM (101359..100499)
(101895..101542)
(101868..102590)
IS26 transposase (101868..102590)
sat (102959..104038)
sat streptothricin acetyltransferase Sat-1 (102959..104038)
(104134..104742)
HAD-superfamily, subfamily IB hydrolase (104134..104742)
aadA (104788..105591)
aadA aminoglycoside adenylyltransferase (104788..105591)
(106455..105733)
IS26 transposase (106455..105733)
(106428..107216)
(108165..107266)
conserved hypothetical protein (108165..107266)
(108445..108155)
conserved hypothetical protein (108445..108155)
vagC (108741..108971)
vagC plasmid maintenance protein VagC (108741..108971)
vagD (108968..109384)
vagD plasmid maintenance protein VagD (108968..109384)
(111684..109546)
conserved hypothetical protein (111684..109546)
(112038..112295)
conserved hypothetical protein (112038..112295)
(112295..112885)
conserved hypothetical protein (112295..112885)
(113148..114704)
conserved hypothetical protein (113148..114704)
(114896..115513)
conserved hypothetical protein (114896..115513)
(116885..115806)
putative permease (116885..115806)
(116990..117313)
transcriptional regulator, ArsR family (116990..117313)
(118569..117847)
IS26 transposase (118569..117847)
(118542..119474)
Tn1721 transposase (118542..119474)
(119532..119774)
conserved hypothetical protein (119532..119774)
tetR (120483..119806)
tetR tetracycline repressor protein, class A (120483..119806)
tetA (120487..121761)
tetA tetracycline resistance protein, class A (120487..121761)
(122677..121793)
drug/metabolite transporter (122677..121793)
(123222..122815)
conserved hypothetical protein (123222..122815)
(123142..124896)
(125564..124842)
IS26 transposase (125564..124842)
(125537..125896)
(126901..126086)
aminoglycoside 3'-phosphotransferase (126901..126086)
(127034..127756)
IS26 transposase (127034..127756)
(127762..128367)
(128624..128364)
(128847..128635)
IS1 transposase orfA (128847..128635)
pemK (129432..129067)
pemK stable plasmid inheritance protein PemK (129432..129067)
pemI (129658..129401)
pemI stable plasmid inheritance protein PemI (129658..129401)
(130404..129751)
CAAX amino terminal protease family (130404..129751)