INTEGRALL

The Integron Database

Salmonella enterica subsp. enterica serovar Typhimurium
Accession Number: CP012682
Source: blood-culture - Mexico: Mexico City
Journal: Unpublished
Published: 17-SEP-2015
Title: Complete genome sequencing of a multidrug-resistant and human-invasive Salmonella Typhimurium strain of the emerging sequence type 213 harboring a blaCMY-2-carrying IncF plasmid
Authors: Vinuesa,P., Silva,C., Calva,E.
Remarks: Class 1 integrons. In27 and In1003
Promoter: PcH1, PcH1
Gene Product Sequence
(322..861)
hypothetical protein (322..861)
(866..1153)
hypothetical protein (866..1153)
repA_1 (1174..2238)
repA_1 IncA/C2 plasmid replication protein RepA (1174..2238)
(2584..2865)
hypothetical protein (2584..2865)
(3024..3188)
hypothetical protein (3024..3188)
(3709..3275)
hypothetical protein (3709..3275)
cysH_2 (4842..3727)
cysH_2 PAPS reductase (4842..3727)
(5111..5719)
hypothetical protein (5111..5719)
(5724..6245)
hypothetical protein (5724..6245)
(6248..6769)
hypothetical protein (6248..6769)
(6866..7339)
hypothetical protein (6866..7339)
(7329..7643)
hypothetical protein (7329..7643)
(7648..8502)
hypothetical protein (7648..8502)
sspA_2 (8502..9461)
sspA_2 signal peptide peptidase SppA (8502..9461)
dsbA_3 (9477..10337)
dsbA_3 periplasmic thiol:disulfide interchange protein DsbA (9477..10337)
(10371..10799)
hypothetical protein (10371..10799)
(10856..11215)
hypothetical protein (10856..11215)
(11215..11661)
hypothetical protein (11215..11661)
(11658..12176)
hypothetical protein (11658..12176)
(12179..12406)
hypothetical protein (12179..12406)
(12393..13250)
hypothetical protein (12393..13250)
(13276..13464)
hypothetical protein (13276..13464)
(13481..13657)
hypothetical protein (13481..13657)
insB_3 (13694..14398)
insB_3 transposase InsB4 for insertion sequence IS26 (13694..14398)
ble (14694..14978)
ble bleomycin resistance Ble (14694..14978)
nimC/nimA (15690..15298)
nimC/nimA NimC/NimA family protein (15690..15298)
(15961..15845)
hypothetical protein (15961..15845)
aadA_2 (16954..16175)
aadA_2 aminoglycoside adenylyltranse protein AadA (16954..16175)
dhfrA (17871..17374)
dhfrA dihydrofolate reductase DhfrA12 (17871..17374)
intI1_1 (18016..18963)
intI1_1 integrase type 1 IntI1 (18016..18963)
insB_4 (19701..18997)
insB_4 transposase InsB4 for insertion sequence IS26 (19701..18997)
(20650..19748)
hypothetical protein (20650..19748)
(20928..20701)
hypothetical protein (20928..20701)
(22167..21625)
hypothetical protein (22167..21625)
aac3 (23040..22180)
aac3 aminoglycoside acetyltransferase Aac3 (23040..22180)
(23190..23121)
RNA-OUT (23190..23121)
(23183..23977)
hypothetical protein (23183..23977)
insB_5 (24627..23923)
insB_5 transposase InsB4 for insertion sequence IS26 (24627..23923)
(25382..25185)
hypothetical protein (25382..25185)
silP (27870..25423)
silP copper-translocating P-type ATPase SilP (27870..25423)
(28437..27997)
silver resistance protein (28437..27997)
silA (31670..28524)
silA heavy metal efflux pump SilA (31670..28524)
silB (32973..31681)
silB efflux transporter, RND family, MFP subunit, silB (32973..31681)
cusF (33440..33087)
cusF periplasmic copper-binding protein CusF (33440..33087)
silC_2 (34853..33468)
silC_2 outer membrane efflux protein SilC (34853..33468)
silR (35043..35723)
silR putative transcriptional regulatory protein silR (35043..35723)
cusS_2 (35716..37191)
cusS_2 sensor kinase CusS (35716..37191)
silE (37442..37873)
silE silver-binding protein SilE (37442..37873)
(38017..38367)
hypothetical protein (38017..38367)
(38739..38596)
hypothetical protein (38739..38596)
hnh (39663..39292)
hnh endonuclease HNH (39663..39292)
(40300..41274)
putative diguanylate cyclase YedQ (40300..41274)
(41844..42140)
hypothetical protein (41844..42140)
(42205..42876)
hypothetical protein (42205..42876)
rsdB_1 (42896..43683)
(43699..43827)
hypothetical protein (43699..43827)
(44789..43977)
IS3 family transposase orfB (44789..43977)
insI (45917..44883)
insI transposase InsI for insertion sequence element IS30D (45917..44883)
(46265..46107)
hypothetical protein (46265..46107)
(46412..46693)
hypothetical protein (46412..46693)
insA_1 (47171..46794)
insA_1 IS1 transposase (47171..46794)
udhA_2 (47602..48927)
udhA_2 soluble pyridine nucleotide transhydrogenase (47602..48927)
insA_2 (49106..49381)
insA_2 IS1 transposase (49106..49381)
insA_3 (49558..49803)
insA_3 IS1 transposase (49558..49803)
(49833..50180)
IS66 transposase (49833..50180)
(50229..50609)
IS66 transposase (50229..50609)
(50648..51766)
transposase (50648..51766)
(53054..51777)
hypothetical protein (53054..51777)
insA_4 (54030..54407)
insA_4 IS1 transposase (54030..54407)
insO (54618..55271)
insO transposase InsO (54618..55271)
parB_1 (56737..55766)
parB_1 plasmid partition protein B ParB (56737..55766)
parA_1 (57903..56737)
parA_1 plasmid partition protein A ParA (57903..56737)
repA_2 (58644..59654)
repA_2 repFIB replication protein A (58644..59654)
tnpAIS43_1 (61494..60490)
tnpAIS43_1 IS4321 transposase (61494..60490)
merR_1 (62007..61573)
merR_1 putative transcriptional regulator MerR (62007..61573)
merT_1 (62079..62429)
merT_1 putative mercuric transport protein (62079..62429)
merP_1 (62443..62718)
merP_1 mercury resistance operon protein MerP (62443..62718)
merC (62754..63176)
merC mercuric transport protein (62754..63176)
merA_1 (63228..64922)
merA_1 putative mercuric reductase (63228..64922)
merD_1 (64940..65302)
merD_1 transcriptional regulator MerD (64940..65302)
merE_1 (65299..65535)
merE_1 mercury resistance protein (65299..65535)
urf2 (65532..66239)
urf2 Urf2 (65532..66239)
tniA (66314..67582)
tniA transposase TniA for transposition module tni (66314..67582)
insB_6 (67629..68333)
insB_6 transposase InsB4 for insertion sequence IS26 (67629..68333)
(68662..68778)
hypothetical protein (68662..68778)
yusZ (68791..69654)
yusZ short chain dehydrogenase (68791..69654)
(69692..69937)
GrpB protein (69692..69937)
sul2_1 (70405..71196)
sul2_1 sulfonamide-resistant dihydropteroate synthase Sul2 (70405..71196)
tnpA_11 (71554..72129)
tnpA_11 transposase (71554..72129)
qacEdelta (72708..72376)
qacEdelta QacEdelta1 protein (72708..72376)
aadA_3 (73657..72878)
aadA_3 aminoglycoside adenylyltranse (73657..72878)
(74335..73727)
haloacid dehalogenase-like hydrolase (74335..73727)
sat (75357..74431)
sat streptothricin acetyl-transferase (75357..74431)
intI1_2 (75440..76453)
intI1_2 integrase type 1 IntI1 (75440..76453)
tnpM (76506..77006)
tnpM transposon Tn21 modulator protein (76506..77006)
insB_7 (77216..77920)
insB_7 transposase InsB4 for insertion sequence IS26 (77216..77920)
(78265..77954)
hypothetical protein (78265..77954)
traE_1 (78875..78249)
traE_1 IncF plasmid conjugative transfer pilus assembly protein TraE (78875..78249)
traL_1 (79152..79003)
traL_1 conjugative transfer protein TraL (79152..79003)
(79662..79297)
hypothetical protein (79662..79297)
(79817..79674)
hypothetical protein (79817..79674)
(80660..79998)
hypothetical protein (80660..79998)
(81037..80660)
hypothetical protein (81037..80660)
(81493..81047)
hypothetical protein (81493..81047)
(82132..81503)
hypothetical protein (82132..81503)
(82634..82089)
hypothetical protein (82634..82089)
traD_1 (84549..82684)
traD_1 TraD (84549..82684)
traI_1 (87518..84546)
traI_1 TraI (87518..84546)
(87686..88303)
hypothetical protein (87686..88303)
topB_2 (88518..90710)
topB_2 DNA topoisomerase III (88518..90710)
(90725..91213)
hypothetical protein (90725..91213)
(91591..91304)
hypothetical protein (91591..91304)
(91814..91608)
hypothetical protein (91814..91608)
(92432..91815)
hypothetical protein (92432..91815)
(93144..92488)
hypothetical protein (93144..92488)
dcm-2 (94571..93144)
dcm-2 DNA (cytosine-5-)-methyltransferase (94571..93144)
(95075..94575)
hypothetical protein (95075..94575)
(95395..95084)
hypothetical protein (95395..95084)
(95907..95401)
hypothetical protein (95907..95401)
(96574..95900)
hypothetical protein (96574..95900)
(96830..96549)
hypothetical protein (96830..96549)
(97527..97670)
hypothetical protein (97527..97670)
(97762..98397)
hypothetical protein (97762..98397)
(98722..98450)
hypothetical protein (98722..98450)
parB_2 (99952..98771)
parB_2 partition protein ParB (99952..98771)
parA_2 (100741..99956)
parA_2 plasmid partitioning protein A ParA (100741..99956)
(101226..100915)
hypothetical protein (101226..100915)
sul2_2 (101533..102348)
sul2_2 sulfonamide-resistant dihydropteroate synthase Sul2 (101533..102348)
strA (102409..103212)
strA streptomycin resistance protein A StrA (102409..103212)
strB (103212..104048)
strB streptomycin resistance protein B StrB (103212..104048)
(104354..104596)
hypothetical protein (104354..104596)
tetR_2 (105305..104628)
tetR_2 tetracycline repressor protein TetR (105305..104628)
tetA (105384..106583)
tetA tetracycline efflux protein (105384..106583)
(106738..106514)
putative trasposase (106738..106514)
lysR_3 (107155..106850)
lysR_3 putative transcriptional regulator protein (107155..106850)
floR (108397..107183)
floR florfenicol/chloramphenicol resistance protein FloR (108397..107183)
virD2 (109435..108614)
virD2 type IV secretory pathway protein VirD2 (109435..108614)
insA_5 (111022..109529)
insA_5 transposase InsA (111022..109529)
(111457..111233)
hypothetical protein (111457..111233)
paa4 (112191..111454)
paa4 resolvase (112191..111454)
(112298..112789)
hypothetical protein (112298..112789)
insB_8 (113527..112823)
insB_8 transposase InsB4 for insertion sequence IS26 (113527..112823)
(113834..114031)
hypothetical protein (113834..114031)
insB_9 (114078..114782)
insB_9 transposase InsB4 for insertion sequence IS26 (114078..114782)
(115494..114997)
hypothetical protein (115494..114997)
(115985..115497)
hypothetical protein (115985..115497)
(116082..116417)
hypothetical protein (116082..116417)
(116902..116432)
hypothetical protein (116902..116432)
(117266..116895)
hypothetical protein (117266..116895)
(117471..117277)
hypothetical protein (117471..117277)
(118360..117812)
transcriptional regulator (118360..117812)
higB (118523..118873)
higB toxin HigB (118523..118873)
higA (118878..119180)
higA Cro/Cl family transcriptional regulator (118878..119180)
parM (119500..119207)
parM segregation protein ParM (119500..119207)
hupA_3 (119860..119588)
hupA_3 transcriptional regulator HU subunit alpha (119860..119588)
(120316..119918)
nuclease (120316..119918)
insB_10 (121060..120356)
insB_10 transposase InsB4 for insertion sequence IS26 (121060..120356)
oqxA (121379..122554)
oqxA RND multidrug efflux membrane fusion protein OqxA (121379..122554)
oqxB (122578..125730)
oqxB multidrug efflux RND transporter permease subunit OqxB (122578..125730)
(126279..125800)
transcriptional regulator (126279..125800)
insB_11 (127085..126381)
insB_11 transposase InsB4 for insertion sequence IS26 (127085..126381)
(127670..127122)
cyclic-di-GMP phosphodiesterase (127670..127122)
merE_2 (127903..127667)
merE_2 mercury resistance protein (127903..127667)
merD_2 (128265..127900)
merD_2 MerD protein (128265..127900)
merB (129015..128377)
merB alkylmercury lyase protein MerB (129015..128377)
merA_2 (130715..129030)
merA_2 mercuric reductase (130715..129030)
merP_2 (131062..130787)
merP_2 mercury resistance operon protein MerP (131062..130787)
merT_2 (131428..131078)
merT_2 MerT (131428..131078)
merR_2 (131500..131934)
merR_2 Hg(II)-responsive transcriptional regulator MerR (131500..131934)
tnpAIS43_2 (132034..133038)
tnpAIS43_2 IS4321 transposase (132034..133038)
(133444..133560)
hypothetical protein (133444..133560)
(134169..134894)
hypothetical protein (134169..134894)
rhs (135027..139280)
rhs type IV secretion protein Rhs (135027..139280)
(139270..139692)
hypothetical protein (139270..139692)
(140933..140331)
hypothetical protein (140933..140331)
(141203..141484)
hypothetical protein (141203..141484)
(141503..141790)
hypothetical protein (141503..141790)
(141783..142319)
hypothetical protein (141783..142319)
xerD (142322..143332)
xerD integrase/recombinase XerD (142322..143332)
yacC (143337..144206)
yacC DNA polymerase III, epsilon subunit andrelated 3'-5' exonuclease (143337..144206)
(144203..144694)
hypothetical protein (144203..144694)
(145021..145896)
hypothetical protein (145021..145896)
krfA (146058..147098)
krfA plasmid replication region DNA-binding domain protein KfrA (146058..147098)
(147098..147376)
hypothetical protein (147098..147376)
uvrD_2 (147385..148896)
uvrD_2 UvrD/REP helicase family protein (147385..148896)
traF_2 (149019..150047)
traF_2 conjugative transfer assembly protein TraF (149019..150047)
traH (150049..151482)
traH conjugative transfer assembly protein TraH (150049..151482)
traG_1 (151495..152262)
traG_1 type IV conjugative transfer system protein TraG (151495..152262)
(153189..152302)
IS629 orfB (153189..152302)
(153234..153118)
ALIL (153234..153118)
tnpE_1 (153515..153189)
tnpE_1 IS629 orfA (153515..153189)
traG_2 (153633..156422)
traG_2 type IV conjugative transfer system protein TraG (153633..156422)
(156822..156460)
permease (156822..156460)
ner (157538..157810)
ner nucleotide excision repair protein Ner (157538..157810)
trbN (157810..158343)
trbN type IV secretory pathway lytic transglycosylase TrbN (157810..158343)
(158354..158587)
flagellar transcriptional activator (158354..158587)
(158738..158962)
hypothetical protein (158738..158962)
flhC_2 (158959..159510)
flhC_2 flagellar transcriptional activator FlhC (158959..159510)
(159989..159570)
H-NS-like DNA-binding protein (159989..159570)
(160284..159991)
hypothetical protein (160284..159991)
stbA_2 (161284..160301)
stbA_2 StbA plasmid stability protein (161284..160301)