INTEGRALL

The Integron Database

Escherichia coli
Accession Number: CP038455
Source: Japan: Tokyo
Journal: Unpublished
Published: 06-MAY-2019
Title: Whole genome analysis of EC-129, an NDM-5 and MCR-1 co-producing E. coli clinical isolate from a Hospital in Tokyo, Japan
Authors: Nukui,Y., Ayibieke,A., Saito,R., Koike,R.
Remarks: Class 1 integrons. In1710, In191.
Promoter: PcW, PcW
Gene Product Sequence
(1..978)
RepB family plasmid replication initiator protein (1..978)
(1994..1263)
site-specific integrase (1994..1263)
(2224..2928)
IS6-like element IS26 family transposase (2224..2928)
(3434..3150)
transposase (3434..3150)
intI1 (4416..3403)
intI1 class 1 integron integrase IntI1 (4416..3403)
(4708..5262)
fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5 (4708..5262)
(5341..5814)
trimethoprim-resistant dihydrofolate reductase DfrA27 (5341..5814)
(5995..6840)
ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA16 (5995..6840)
(6957..7304)
quaternary ammonium compound efflux SMR transporter QacE delta 1 (6957..7304)
sul1 (7298..8137)
sul1 sulfonamide-resistant dihydropteroate synthase Sul1 (7298..8137)
(8542..10083)
IS91 family transposase (8542..10083)
(10317..10595)
sodium:proton antiporter (10317..10595)
(11431..10676)
16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB1 (11431..10676)
(12461..11601)
class A broad-spectrum beta-lactamase TEM-1 (12461..11601)
(13051..12644)
resolvase (13051..12644)
(13761..13057)
IS6-like element IS26 family transposase (13761..13057)
(13994..14854)
aminoglycoside N-acetyltransferase AAC(3)-IId (13994..14854)
(14867..15409)
tunicamycin resistance protein (14867..15409)
(16082..15891)
hypothetical protein (16082..15891)
(16088..16333)
hypothetical protein (16088..16333)
(16384..17520)
DUF3883 domain-containing protein (16384..17520)
(17635..19005)
IS1182-like element ISCfr1 family transposase (17635..19005)
(19826..20686)
class A broad-spectrum beta-lactamase TEM-1 (19826..20686)
(20998..20834)
mobilization protein (MobL-like) (20998..20834)
(21753..20917)
aminoglycoside O-phosphotransferase APH(6)-Id (21753..20917)
aph(3'')-Ib (22556..21753)
aph(3'')-Ib aminoglycoside O-phosphotransferase APH(3'')-Ib (22556..21753)
sul2 (23432..22617)
sul2 sulfonamide-resistant dihydropteroate synthase Sul2 (23432..22617)
(23456..23533)
transcriptional regulator (23456..23533)
(23762..23938)
DUF4102 domain-containing protein (23762..23938)
(25124..24120)
IS110-like element IS5075 family transposase (25124..24120)
(28169..25203)
Tn3 family transposase (28169..25203)
(28486..28172)
recombinase family protein (28486..28172)
(28469..28594)
5,10-methylenetetrahydrofolate reductase (28469..28594)
(29244..28540)
IS6-like element IS26 family transposase (29244..28540)
(29787..29314)
trimethoprim-resistant dihydrofolate reductase DfrA14 (29787..29314)
intI1 (29943..30956)
intI1 class 1 integron integrase IntI1 (29943..30956)
(30901..31158)
hypothetical protein (30901..31158)
(31159..31509)
DUF3330 domain-containing protein (31159..31509)
(31685..32245)
recombinase family protein (31685..32245)
(32249..32845)
DUF4158 domain-containing protein (32249..32845)
(33554..32877)
TetR family transcriptional regulator (33554..32877)
tet(A) (33633..34832)
tet(A) tetracycline efflux MFS transporter Tet(A) (33633..34832)
(35748..34864)
EamA family transporter (35748..34864)
(36278..35886)
cysteine hydrolase (36278..35886)
(36282..38033)
Tn3-like element TnAs1 family transposase (36282..38033)
(40020..38248)
DUF262 domain-containing protein (40020..38248)
(40637..40305)
mRNA interferase PemK (40637..40305)
(40896..40639)
antitoxin PemI (40896..40639)
(41642..40989)
CPBP family intramembrane metalloprotease (41642..40989)
(42218..41832)
hypothetical protein (42218..41832)
repA (43438..42581)
repA incFII family plasmid replication initiator RepA (43438..42581)
(43505..43431)
RepA leader peptide Tap (43505..43431)
(43615..43698)
replication protein RepA (43615..43698)
repA (43996..43742)
repA replication regulatory protein RepA (43996..43742)
(44826..44236)
DUF2726 domain-containing protein (44826..44236)
hha (45073..44865)
hha hemolysin expression modulator Hha (45073..44865)
(45580..45119)
endonuclease (45580..45119)
(46034..45822)
hypothetical protein (46034..45822)
finO (46725..46165)
finO fertility inhibition protein FinO (46725..46165)
traX (47526..46780)
traX type-F conjugative transfer system pilin acetylase TraX (47526..46780)
traI (52816..47546)
traI conjugative transfer relaxase/helicase TraI (52816..47546)
traD (54987..52816)
traD type IV conjugative transfer system coupling protein TraD (54987..52816)
(55778..55038)
hypothetical protein (55778..55038)
traT (56712..55981)
traT complement resistance protein TraT (56712..55981)
(57240..56761)
surface exclusion protein (57240..56761)
(60084..57262)
conjugal transfer protein TraG (60084..57262)
(61454..60081)
conjugal transfer protein TraH (61454..60081)
trbJ (61816..61454)
trbJ P-type conjugative transfer protein TrbJ (61816..61454)
trbB (62291..61746)
trbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB (62291..61746)
traQ (62559..62278)
traQ type-F conjugative transfer system pilin chaperone TraQ (62559..62278)
traF (63418..62675)
traF type-F conjugative transfer system pilin assembly protein TraF (63418..62675)
(63668..63411)
conjugal transfer protein TrbE (63668..63411)
traN (65545..63695)
traN type-F conjugative transfer system mating-pair stabilization protein TraN (65545..63695)
trbC (66180..65542)
trbC type-F conjugative transfer system pilin assembly protein TrbC (66180..65542)
(67181..66189)
conjugal transfer protein TraU (67181..66189)
traW (67810..67178)
traW type-F conjugative transfer system protein TraW (67810..67178)
trbI (68193..67807)
trbI type-F conjugative transfer system protein TrbI (68193..67807)
traC (70820..68190)
traC type IV secretion system protein TraC (70820..68190)
(71043..71165)
nonribosomal peptide synthetase/polyketide synthase (71043..71165)
(71179..72201)
IS21-like element IS100 family transposase (71179..72201)
(72198..72980)
AAA family ATPase (72198..72980)
(73267..73046)
hypothetical protein (73267..73046)
(74272..73349)
IS5 family transposase (74272..73349)
(74576..74361)
hypothetical protein (74576..74361)
(75129..74656)
hypothetical protein (75129..74656)
(75535..75122)
hypothetical protein (75535..75122)
traR (75749..75528)
traR conjugal transfer protein TraR (75749..75528)
traV (76399..75884)
traV type IV conjugative transfer system protein TraV (76399..75884)
(76764..76396)
DUF2689 domain-containing protein (76764..76396)
(77293..76703)
conjugal transfer protein TraP (77293..76703)
(78710..77283)
conjugal transfer protein TraB (78710..77283)
traK (79381..78710)
traK type-F conjugative transfer system secretin TraK (79381..78710)
traE (79991..79425)
traE type IV conjugative transfer system protein TraE (79991..79425)
traL (80324..80013)
traL type IV conjugative transfer system protein TraL (80324..80013)
traA (80698..80339)
traA type IV conjugative transfer system pilin TraA (80698..80339)
(80959..80732)
relaxosome protein TraY (80959..80732)
(81739..81053)
PAS domain-containing protein (81739..81053)
traM (82313..81930)
traM relaxosome protein TraM (82313..81930)
(82590..83237)
lytic transglycosylase (82590..83237)
(84463..83534)
DUF945 domain-containing protein (84463..83534)
(84760..84473)
hypothetical protein (84760..84473)
(84991..84785)
single-stranded DNA-binding protein (84991..84785)
(85181..84993)
hypothetical protein (85181..84993)
(85462..85232)
hypothetical protein (85462..85232)
(85840..85682)
type I toxin-antitoxin system Hok family toxin (85840..85682)
(86839..86120)
plasmid SOS inhibition protein A (86839..86120)
psiB (87270..86836)
psiB conjugation system SOS inhibitor PsiB (87270..86836)
(89283..87325)
ParB/RepB/Spo0J family partition protein (89283..87325)
(89581..89348)
DUF905 domain-containing protein (89581..89348)
(90182..89643)
single-stranded DNA-binding protein (90182..89643)
(90414..90208)
single-stranded DNA-binding protein (90414..90208)
(90604..90416)
hypothetical protein (90604..90416)
(90527..90751)
hypothetical protein (90527..90751)
(90942..90655)
hypothetical protein (90942..90655)
(91657..91094)
class I SAM-dependent methyltransferase (91657..91094)
(93066..91705)
DUF3560 domain-containing protein (93066..91705)
(93348..93118)
hypothetical protein (93348..93118)
(93691..93572)
single-stranded DNA-binding protein (93691..93572)
(93864..94112)
hypothetical protein (93864..94112)
(94421..94215)
hypothetical protein (94421..94215)
(94575..94384)
hypothetical protein (94575..94384)
(94994..94572)
DUF1380 domain-containing protein (94994..94572)
(95343..95041)
antirestriction protein (95343..95041)
(96006..95439)
DUF1472 domain-containing protein (96006..95439)
(96649..96322)
hypothetical protein (96649..96322)
(97128..96694)
DUF1380 domain-containing protein (97128..96694)
(97363..97142)
hypothetical protein (97363..97142)
(98047..97364)
DNA methylase (98047..97364)
(98428..98123)
hypothetical protein (98428..98123)
(99334..98432)
DUF1281 domain-containing protein (99334..98432)
(99641..99372)
hypothetical protein (99641..99372)
(99752..100000)
protein ImpC (99752..100000)
umuD (99997..100434)
umuD translesion error-prone DNA polymerase V autoproteolytic subunit (99997..100434)
umuC (100434..101705)
umuC translesion error-prone DNA polymerase V subunit UmuC (100434..101705)
(102102..101710)
plasmid stability protein (102102..101710)
(103078..102107)
plasmid segregation protein parM (103078..102107)
(103307..103951)
chromosome partitioning protein ParA (103307..103951)
(103945..104220)
CopG family transcriptional regulator (103945..104220)
(104838..104412)
integrase (104838..104412)
(105018..105350)
hypothetical protein (105018..105350)
(105365..105553)
hypothetical protein (105365..105553)
(105563..106762)
IS91 family transposase (105563..106762)
(106933..107931)
MFS transporter (106933..107931)
(107903..108928)
zinc-binding alcohol dehydrogenase family protein (107903..108928)
(109658..108987)
FadR family transcriptional regulator (109658..108987)
(110295..109753)
GGDEF domain-containing protein (110295..109753)
(111009..110312)
IS1 family transposase (111009..110312)
cmi (111189..111061)
cmi colicin M immunity protein (111189..111061)
(112170..111361)
phage integrase family protein (112170..111361)
ccdB (112476..112171)
ccdB type II toxin-antitoxin system toxin CcdB (112476..112171)
ccdA (112696..112478)
ccdA type II toxin-antitoxin system antitoxin CcdA (112696..112478)
(112698..112977)
hypothetical protein (112698..112977)
(113160..112942)
hypothetical protein (113160..112942)
(113164..113859)
DNA-binding protein (113164..113859)
(113856..114476)
hypothetical protein (113856..114476)
(114473..115261)
DUF2971 domain-containing protein (114473..115261)
(115297..116037)
abortive phage infection protein (115297..116037)
(116825..116196)
hypothetical protein (116825..116196)
(116960..117290)
hypothetical protein (116960..117290)