INTEGRALL

The Integron Database

Citrobacter amalonaticus
Accession Number: CP041363
Source: Switzerland: Bern
Journal: Unpublished
Published: 14-JUL-2019
Title: First Clinical Case of In Vivo Acquisition of DHA-1 plasmid-mediated AmpC
Authors: Clement,M., Keller,P.M., Bernasconi,O.J., Stirnimann,G., Frey,P.M., Bloemberg,G.V., Sendi,P., Endimiani,A.
Remarks: Class 1 integron. In1621
Promoter: PcH1
Gene Product Sequence
(81658..81724)
RepA leader peptide Tap (81658..81724)
repA (1..858)
repA incFII family plasmid replication initiator RepA (1..858)
(1221..1607)
hypothetical protein (1221..1607)
(1797..2450)
CPBP family intramembrane metalloprotease (1797..2450)
(2543..2800)
antitoxin PemI (2543..2800)
(2802..3134)
mRNA interferase PemK (2802..3134)
(3383..3798)
IS1 family transposase (3383..3798)
(4379..3834)
Tn3 family transposase (4379..3834)
(5149..4445)
IS6-like element IS26 family transposase (5149..4445)
(5543..5217)
ANT(3'')-Ia family aminoglycoside nucleotidyltransferase (5543..5217)
(6147..5674)
trimethoprim-resistant dihydrofolate reductase DfrA17 (6147..5674)
intI1 (6305..6985)
intI1 class 1 integron integrase IntI1 (6305..6985)
(7050..7754)
IS6-like element IS26 family transposase (7050..7754)
(7804..8049)
SDR family oxidoreductase (7804..8049)
(8789..8145)
quinolone resistance pentapeptide repeat protein QnrB4 (8789..8145)
pspF (9846..8872)
pspF phage shock protein operon transcriptional activator (9846..8872)
pspA (10017..10685)
pspA phage shock protein PspA (10017..10685)
pspB (10740..10964)
pspB envelope stress response membrane protein PspB (10740..10964)
pspC (10964..11323)
pspC envelope stress response membrane protein PspC (10964..11323)
pspD (11332..11562)
pspD phage shock protein PspD (11332..11562)
(11921..11751)
LacI family transcriptional regulator (11921..11751)
(12718..11924)
alpha-2-macroglobulin family protein (12718..11924)
(14052..12913)
class C beta-lactamase DHA-1 (14052..12913)
(14163..15038)
LysR family transcriptional regulator (14163..15038)
hypA (15407..15042)
hypA hydrogenase maturation nickel metallochaperone HypA (15407..15042)
(15300..15635)
QacE family quaternary ammonium compound efflux SMR transporter (15300..15635)
sul1 (15629..16468)
sul1 sulfonamide-resistant dihydropteroate synthase Sul1 (15629..16468)
(16577..16398)
hypothetical protein (16577..16398)
(16596..16799)
hypothetical protein (16596..16799)
chrA (16955..18160)
chrA chromate efflux transporter (16955..18160)
(18171..18476)
helix-turn-helix transcriptional regulator (18171..18476)
(18674..18492)
resolvase (18674..18492)
(18703..19467)
IS6-like element IS6100 family transposase (18703..19467)
(19528..19439)
type VII secretion-associated protein (19528..19439)
(20014..19658)
hypothetical protein (20014..19658)
(20544..19960)
TetR/AcrR family transcriptional regulator (20544..19960)
(21782..20544)
MFS transporter (21782..20544)
mph(A) (22684..21779)
mph(A) Mph(A) family macrolide 2'-phosphotransferase (22684..21779)
(22747..22860)
adenine-specific DNA-methyltransferase (22747..22860)
(23510..22806)
IS6-like element IS26 family transposase (23510..22806)
(23590..24036)
IS1-like element IS1B family transposase (23590..24036)
(24052..24549)
hypothetical protein (24052..24549)
(24958..24827)
transposase (24958..24827)
(25485..25719)
type II toxin-antitoxin system RelE/ParE family toxin (25485..25719)
(25847..26128)
hypothetical protein (25847..26128)
(26601..26251)
protein stbB (26601..26251)
(27566..26604)
plasmid segregation protein ParM (27566..26604)
(27714..28007)
hypothetical protein (27714..28007)
(28127..27948)
hypothetical protein (28127..27948)
(28084..28767)
DNA methylase (28084..28767)
(28768..28989)
hypothetical protein (28768..28989)
(29003..29437)
DUF1380 domain-containing protein (29003..29437)
(29488..29713)
hypothetical protein (29488..29713)
(30137..30709)
DUF1472 domain-containing protein (30137..30709)
(30682..31107)
antirestriction protein (30682..31107)
(31154..31576)
DUF1380 domain-containing protein (31154..31576)
(31573..31764)
hypothetical protein (31573..31764)
(32539..32116)
hypothetical protein (32539..32116)
(32802..33032)
hypothetical protein (32802..33032)
(33084..34445)
DUF3560 domain-containing protein (33084..34445)
(34492..35055)
class I SAM-dependent methyltransferase (34492..35055)
(35055..35303)
hypothetical protein (35055..35303)
(35207..35422)
transporter (35207..35422)
(35477..35670)
hypothetical protein (35477..35670)
(35833..35597)
hypothetical protein (35833..35597)
(35898..36425)
single-stranded DNA-binding protein (35898..36425)
(36483..36716)
DUF905 domain-containing protein (36483..36716)
(36777..38744)
ParB/RepB/Spo0J family partition protein (36777..38744)
psiB (38813..39247)
psiB conjugation system SOS inhibitor PsiB (38813..39247)
(39244..39963)
plasmid SOS inhibition protein A (39244..39963)
(40243..40401)
type I toxin-antitoxin system Hok family toxin (40243..40401)
(40624..40842)
hypothetical protein (40624..40842)
(40897..41090)
hypothetical protein (40897..41090)
(41253..41017)
hypothetical protein (41253..41017)
(41316..41612)
hypothetical protein (41316..41612)
(41723..42544)
DUF945 domain-containing protein (41723..42544)
(43431..42841)
lytic transglycosylase (43431..42841)
(43614..43519)
plasmid stabilization protein (43614..43519)
traM (43766..44149)
traM relaxosome protein TraM (43766..44149)
traJ (44343..45014)
traJ conjugal transfer transcriptional regulator TraJ (44343..45014)
(45151..45378)
relaxosome protein TraY (45151..45378)
(45411..45770)
pilin (45411..45770)
traL (45785..46096)
traL type IV conjugative transfer system protein TraL (45785..46096)
traE (46118..46684)
traE type IV conjugative transfer system protein TraE (46118..46684)
traK (46671..47399)
traK type-F conjugative transfer system secretin TraK (46671..47399)
(47399..48850)
conjugal transfer protein TraB (47399..48850)
(48819..49406)
conjugal transfer protein TraP (48819..49406)
(49345..49713)
DUF2689 domain-containing protein (49345..49713)
traV (49710..50225)
traV type IV conjugative transfer system lipoprotein TraV (49710..50225)
traR (50360..50581)
traR conjugal transfer protein TraR (50360..50581)
(50574..50987)
hypothetical protein (50574..50987)
(50980..51453)
hypothetical protein (50980..51453)
(51533..51751)
hypothetical protein (51533..51751)
(51779..52126)
hypothetical protein (51779..52126)
traC (52252..54882)
traC type IV secretion system protein TraC (52252..54882)
trbI (54879..55265)
trbI type-F conjugative transfer system protein TrbI (54879..55265)
traW (55262..55894)
traW type-F conjugative transfer system protein TraW (55262..55894)
(55891..56883)
conjugal transfer protein TraU (55891..56883)
(56913..57218)
hypothetical protein (56913..57218)
trbC (57227..57865)
trbC type-F conjugative transfer system pilin assembly protein TrbC (57227..57865)
traN (57862..59712)
traN type-F conjugative transfer system mating-pair stabilization protein TraN (57862..59712)
(59739..59996)
conjugal transfer protein TrbE (59739..59996)
traF (59989..60732)
traF type-F conjugative transfer system pilin assembly protein TraF (59989..60732)
trbA (60746..61090)
trbA conjugal transfer protein TrbA (60746..61090)
traQ (61209..61493)
traQ type-F conjugative transfer system pilin chaperone TraQ (61209..61493)
trbB (61480..62025)
trbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB (61480..62025)
trbJ (61955..62302)
trbJ P-type conjugative transfer protein TrbJ (61955..62302)
(62250..62675)
conjugal transfer protein TrbF (62250..62675)
(62662..64035)
conjugal transfer protein TraH (62662..64035)
(64032..66854)
conjugal transfer protein TraG (64032..66854)
(66876..67355)
surface exclusion protein (66876..67355)
traT (67404..68135)
traT complement resistance protein TraT (67404..68135)
(68338..69075)
hypothetical protein (68338..69075)
traD (69126..71378)
traD type IV conjugative transfer system coupling protein TraD (69126..71378)
traI (71378..76648)
traI conjugative transfer relaxase/helicase TraI (71378..76648)
traX (76668..77414)
traX type-F conjugative transfer system pilin acetylase TraX (76668..77414)
(77473..78333)
alpha/beta hydrolase (77473..78333)
finO (78436..78996)
finO fertility inhibition protein FinO (78436..78996)
(79125..79337)
ANR family transcriptional regulator (79125..79337)
(79570..80043)
endonuclease (79570..80043)
hha (80089..80298)
hha hemolysin expression modulator Hha (80089..80298)
(80336..80926)
DUF2726 domain-containing protein (80336..80926)
(81166..81420)
replication regulatory protein RepA (81166..81420)
(81577..81464)
replication protein RepA (81577..81464)