INTEGRALL

The Integron Database

Escherichia coli
Accession Number: CP041441
Source: Pork - China: Yangzhou
Journal: Unpublished
Published: 03-OCT-2019
Title: Application of Nanopore Sequencing for Rapid Characterization of tet(X4)-positive E. coli strains
Authors: Li,R., Lu,X., Liu,Z., Liu,Y., Xiao,X., Wang,Z.
Remarks: Class 1 integron. In155
Promoter: PcW+P2
Gene Product Sequence
(70..1)
hypothetical protein (70..1)
(46..1077)
replication initiation protein (46..1077)
(1218..1418)
hypothetical protein (1218..1418)
(1549..1629)
replication protein (1549..1629)
(1776..1645)
replication protein RepA4 (1776..1645)
(1987..2979)
hypothetical protein (1987..2979)
(3655..3038)
proQ/FINO family protein (3655..3038)
(5406..3850)
AAA family ATPase (5406..3850)
(6261..5671)
hypothetical protein (6261..5671)
(6518..6261)
hypothetical protein (6518..6261)
(6847..7950)
nucleotide-binding containing TIR-like domain protein (6847..7950)
(7980..9140)
DUF4238 domain-containing protein (7980..9140)
(9152..9856)
IS6-like element IS26 family transposase (9152..9856)
(10014..9802)
hypothetical protein (10014..9802)
(10259..11467)
restriction endonuclease (10259..11467)
(12934..11501)
DNA cytosine methyltransferase (12934..11501)
(13028..13300)
IS1 family transposase (13028..13300)
(13557..14254)
IS1 family transposase (13557..14254)
(15213..14422)
ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA22 (15213..14422)
intI1 (15362..16375)
intI1 class 1 integron integrase IntI1 (15362..16375)
(16344..16628)
transposase (16344..16628)
(17366..16662)
IS6-like element IS26 family transposase (17366..16662)
(17427..19121)
Tn3-like element ISKox2 family transposase (17427..19121)
(19278..19189)
conjugal transfer protein (19278..19189)
tet(M) (21298..19379)
tet(M) tetracycline resistance ribosomal protection protein Tet(M) (21298..19379)
(21400..21314)
tetracycline resistance determinant leader peptide (21400..21314)
(21631..21569)
XRE family transcriptional regulator (21631..21569)
(21998..21675)
conjugal transfer protein (21998..21675)
(23757..22033)
Tn3 family transposase (23757..22033)
(23747..23866)
5,10-methylenetetrahydrofolate reductase (23747..23866)
(24516..23812)
IS6-like element IS26 family transposase (24516..23812)
(24673..24587)
glutathione S-transferase (24673..24587)
(25951..24713)
MFS transporter (25951..24713)
mph(A) (26853..25948)
mph(A) Mph(A) family macrolide 2'-phosphotransferase (26853..25948)
(26916..27029)
adenine-specific DNA-methyltransferase (26916..27029)
(27679..26975)
IS6-like element IS26 family transposase (27679..26975)
(28843..27716)
DUF3883 domain-containing protein (28843..27716)
(29139..28894)
hypothetical protein (29139..28894)
(29145..29336)
hypothetical protein (29145..29336)
(30360..29818)
AAA family ATPase (30360..29818)
(31233..30373)
aminoglycoside N-acetyltransferase AAC(3)-IId (31233..30373)
(31269..31436)
lipopolysaccharide core heptose(II) kinase RfaY (31269..31436)
(31376..32281)
IS4-like element ISVsa5 family transposase (31376..32281)
(33034..32330)
IS6-like element IS26 family transposase (33034..32330)
(33419..33270)
chaperonin GroEL (33419..33270)
(34021..33572)
hypothetical protein (34021..33572)
(34646..34536)
hypothetical protein (34646..34536)
erm(B) (35388..34651)
erm(B) 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) (35388..34651)
(35609..35514)
23S rRNA methyltransferase attenuation leader peptide (35609..35514)
(35744..36448)
IS6-like element IS26 family transposase (35744..36448)
(36504..36614)
korC (36504..36614)
(36808..36611)
hypothetical protein (36808..36611)
(37133..38266)
hypothetical protein (37133..38266)
(38286..38570)
korC (38286..38570)
(39388..38741)
hypothetical protein (39388..38741)
(39711..39376)
hypothetical protein (39711..39376)
(40472..39891)
hypothetical protein (40472..39891)
(40675..40899)
hypothetical protein (40675..40899)
(41043..41393)
hypothetical protein (41043..41393)
(41463..42071)
hypothetical protein (41463..42071)
(42139..42921)
phage integrase family protein (42139..42921)
(43334..43059)
CopG family transcriptional regulator (43334..43059)
(43972..43328)
AAA family ATPase (43972..43328)
(44201..45172)
plasmid segregation protein parM (44201..45172)
(45177..45569)
plasmid stability protein (45177..45569)
(46845..45574)
Y-family DNA polymerase (46845..45574)
umuD (47282..46845)
umuD translesion error-prone DNA polymerase V autoproteolytic subunit (47282..46845)
(47527..47279)
protein ImpC (47527..47279)
(47638..47907)
hypothetical protein (47638..47907)
(47945..48847)
DUF1281 domain-containing protein (47945..48847)
(48851..49155)
hypothetical protein (48851..49155)
(49232..49915)
DNA methylase (49232..49915)
(49916..50137)
hypothetical protein (49916..50137)
(50151..50585)
DUF1380 domain-containing protein (50151..50585)
(50631..50856)
hypothetical protein (50631..50856)
(51280..51846)
DUF1472 domain-containing protein (51280..51846)
(51942..52244)
antirestriction protein (51942..52244)
(52291..52713)
DUF1380 domain-containing protein (52291..52713)
(52710..52901)
hypothetical protein (52710..52901)
(52978..52880)
pilus assembly protein (52978..52880)
(53201..53016)
hypothetical protein (53201..53016)
ltrA (54846..53179)
ltrA group II intron reverse transcriptase/maturase (54846..53179)
(56066..55560)
hypothetical protein (56066..55560)
(56013..56540)
single-stranded DNA-binding protein (56013..56540)
(56598..56831)
DUF905 domain-containing protein (56598..56831)
(56890..58848)
ParB/RepB/Spo0J family partition protein (56890..58848)
psiB (58903..59337)
psiB conjugation system SOS inhibitor PsiB (58903..59337)
(59334..60053)
plasmid SOS inhibition protein A (59334..60053)
(60050..60508)
hypothetical protein (60050..60508)
(60814..61187)
DUF1472 domain-containing protein (60814..61187)
(61108..61608)
antirestriction protein ArdA (61108..61608)
(62047..61748)
hypothetical protein (62047..61748)
(62069..62314)
hypothetical protein (62069..62314)
(62337..62771)
post-segregation killing protein PndC (62337..62771)
(62865..63131)
hypothetical protein (62865..63131)
(63196..64122)
Rpn family recombination-promoting nuclease/putative transposase (63196..64122)
(64145..64342)
hypothetical protein (64145..64342)
(64624..64373)
helix-turn-helix transcriptional regulator (64624..64373)
(64855..64658)
hypothetical protein (64855..64658)
(64864..65079)
hypothetical protein (64864..65079)
(65204..66052)
DUF4942 domain-containing protein (65204..66052)
(66473..66138)
molybdopterin-guanine dinucleotide biosynthesis protein MobC (66473..66138)
(66707..67039)
nikA protein (66707..67039)
(67050..69749)
relaxase NikB (67050..69749)
(72077..69786)
conjugal transfer protein TrbC (72077..69786)
(73140..72070)
DsbC family protein (73140..72070)
(74367..73159)
conjugal transfer protein TrbA (74367..73159)
(75765..74674)
protein finQ (75765..74674)
(76080..76232)
Hok/Gef family protein (76080..76232)
(76555..76304)
hypothetical protein (76555..76304)
(76957..77025)
recombinase (76957..77025)
(77135..77347)
hypothetical protein (77135..77347)
hha (78073..77864)
hha hemolysin expression modulator Hha (78073..77864)
(78785..78171)
ethanolamine utilization protein EutE (78785..78171)
(81029..78861)
hypothetical protein (81029..78861)
(81710..81126)
conjugal transfer protein TraX (81710..81126)
(82941..81739)
conjugal transfer protein (82941..81739)
(83522..82908)
conjugal transfer protein TraV (83522..82908)
(86566..83522)
ATP-binding protein (86566..83522)
(87456..86656)
conjugal transfer protein TraT (87456..86656)
(87628..87440)
TraS protein (87628..87440)
(88096..87692)
conjugal transfer protein TraR (88096..87692)
(88674..88147)
conjugal transfer protein TraQ (88674..88147)
(89378..88674)
conjugal transfer protein TraP (89378..88674)
(90667..89378)
conjugal transfer protein TraO (90667..89378)
(91653..90670)
conjugal transfer protein TraN (91653..90670)
(92356..91664)
conjugal transfer protein TraM (92356..91664)
(92700..92353)
conjugal transfer protein (92700..92353)
(96485..92718)
DNA primase (96485..92718)
(97126..96575)
phospholipase D family protein (97126..96575)
(97431..97141)
conjugal transfer protein (97431..97141)
traJ (98576..97428)
traJ plasmid transfer ATPase TraJ (98576..97428)
(99391..98573)
conjugal transfer protein (99391..98573)
(99846..99388)
hypothetical protein (99846..99388)
(100825..100241)
histidine phosphatase family protein (100825..100241)
(102087..100885)
conjugal transfer protein TraF (102087..100885)
(102997..102173)
conjugal transfer protein TraE (102997..102173)
(104302..103148)
integrase (104302..103148)
(104430..104585)
shufflon protein C' (104430..104585)
(104905..104582)
shufflon protein C (104905..104582)
(105417..105115)
shufflon protein B (105417..105115)
(105503..105384)
pilus assembly protein PilV (105503..105384)
(105470..105688)
shufflon protein D' (105470..105688)
(105676..105939)
prepilin (105676..105939)
pilV (107360..105936)
pilV shufflon system plasmid conjugative transfer pilus tip adhesin PilV (107360..105936)
(108016..107360)
prepilin peptidase (108016..107360)
(108561..108001)
lytic transglycosylase domain-containing protein (108561..108001)
(109185..108571)
pilus assembly protein PilX (109185..108571)
(110300..109203)
pilus assembly protein PilR (110300..109203)
(111866..110313)
ATP-binding protein (111866..110313)
pilP (112329..111877)
pilP type IV pilus biogenesis protein PilP (112329..111877)
(113611..112316)
pilus assembly protein PilO (113611..112316)
(115286..113604)
PilN family type IVB pilus formation outer membrane protein (115286..113604)
(115737..115300)
pilus assembly protein PilP (115737..115300)
(116804..115737)
pili assembly chaperone (116804..115737)
(117431..116838)
pili assembly chaperone (117431..116838)
(117724..117428)
pilJ (117724..117428)
(118154..117900)
pilus assembly protein (118154..117900)
(118036..118335)
hypothetical protein (118036..118335)
(118867..118316)
hypothetical protein (118867..118316)
(119723..119040)
conjugal transfer protein TraC (119723..119040)
(119826..120005)
hypothetical protein (119826..120005)
(120510..119977)
transcription termination factor NusG (120510..119977)
(120638..120516)
conjugal transfer protein TraA (120638..120516)
(121188..120952)
conjugal transfer protein TraA (121188..120952)
(121420..121157)
hypothetical protein (121420..121157)
(121894..122100)
hypothetical protein (121894..122100)