INTEGRALL

The Integron Database

Escherichia coli
Accession Number: CP042897
Source: Raw milk cheese - Egypt
Journal: Unpublished
Published: 20-AUG-2019
Title: Complete Genome Sequencing of Colistin and Cefotaxime Resistant E. coli Strains from Egypt
Authors: Hoffmann,M., Hammad,A.
Remarks: Class 1 integron. In191
Promoter: PcH1
Gene Product Sequence
(166815..167754)
protein TraU (166815..167754)
trbC (62..700)
trbC type-F conjugative transfer system pilin assembly protein TrbC (62..700)
traN (697..2505)
traN type-F conjugative transfer system mating-pair stabilization protein TraN (697..2505)
trbE (2532..2789)
trbE conjugal transfer protein TrbE (2532..2789)
traF (2782..3525)
traF type-F conjugative transfer system pilin assembly protein TraF (2782..3525)
trbA (3541..3888)
trbA conjugal transfer protein TrbA (3541..3888)
(4204..3890)
toxin ArtA (4204..3890)
traQ (4285..4569)
traQ type-F conjugative transfer system pilin chaperone TraQ (4285..4569)
trbB (4556..5101)
trbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB (4556..5101)
trbJ (5031..5372)
trbJ P-type conjugative transfer protein TrbJ (5031..5372)
(5326..5739)
conjugal transfer protein TrbF (5326..5739)
(5736..7112)
conjugal transfer protein TraH (5736..7112)
(7109..9931)
conjugal transfer protein TraG (7109..9931)
(9947..10444)
entry exclusion protein (9947..10444)
traT (10476..11207)
traT complement resistance protein TraT (10476..11207)
(11349..11134)
hypothetical protein (11349..11134)
traD (11460..13613)
traD type IV conjugative transfer system coupling protein TraD (11460..13613)
vapC (14020..13622)
vapC tRNA(fMet)-specific endonuclease VapC (14020..13622)
vapB (14250..14020)
vapB toxin-antitoxin system antitoxin VapB (14250..14020)
traI (14329..19599)
traI conjugative transfer relaxase/helicase TraI (14329..19599)
traX (19619..20365)
traX type-F conjugative transfer system pilin acetylase TraX (19619..20365)
(20424..21284)
alpha/beta hydrolase (20424..21284)
(21387..21947)
fertility inhibition protein FinO (21387..21947)
(22083..22295)
ANR family transcriptional regulator (22083..22295)
(22920..22711)
hypothetical protein (22920..22711)
(22976..23125)
type I toxin-antitoxin system Hok family toxin (22976..23125)
(23409..23666)
replication regulatory protein RepA (23409..23666)
(23819..23688)
replication protein RepA (23819..23688)
(23898..23972)
RepA leader peptide Tap (23898..23972)
(23953..24447)
hypothetical protein (23953..24447)
(24440..24905)
hypothetical protein (24440..24905)
(27843..24838)
Tn3-like element Tn3 family transposase (27843..24838)
(28007..28564)
recombinase family protein (28007..28564)
(28747..29607)
class A broad-spectrum beta-lactamase TEM-1 (28747..29607)
(29919..29755)
mobilization protein (MobL-like) (29919..29755)
(30674..29838)
aminoglycoside O-phosphotransferase APH(6)-Id (30674..29838)
aph(3'')-Ib (31477..30674)
aph(3'')-Ib aminoglycoside O-phosphotransferase APH(3'')-Ib (31477..30674)
sul2 (32353..31538)
sul2 sulfonamide-resistant dihydropteroate synthase Sul2 (32353..31538)
(32377..32454)
transcriptional regulator (32377..32454)
(32683..32859)
DUF4102 domain-containing protein (32683..32859)
(34045..33041)
IS110-like element IS5075 family transposase (34045..33041)
(37090..34124)
Tn3 family transposase (37090..34124)
(37407..37093)
recombinase family protein (37407..37093)
(37390..37515)
5,10-methylenetetrahydrofolate reductase (37390..37515)
(38165..37461)
IS6-like element IS26 family transposase (38165..37461)
(38708..38235)
trimethoprim-resistant dihydrofolate reductase DfrA14 (38708..38235)
intI1 (38864..39877)
intI1 class 1 integron integrase IntI1 (38864..39877)
(39846..40130)
transposase (39846..40130)
(41029..40325)
IS6-like element IS26 family transposase (41029..40325)
(41265..41041)
replication protein (41265..41041)
(43065..41551)
Tn3-like element TnAs1 family transposase (43065..41551)
(43131..43835)
IS6-like element IS26 family transposase (43131..43835)
(43894..43781)
adenine-specific DNA-methyltransferase (43894..43781)
(44121..43933)
hypothetical protein (44121..43933)
(44295..44639)
hypothetical protein (44295..44639)
(44633..44731)
methionyl-tRNA formyltransferase (44633..44731)
(45935..44820)
IS91 family transposase (45935..44820)
(46300..45935)
hypothetical protein (46300..45935)
(46319..46390)
EAL domain-containing protein (46319..46390)
(47573..46422)
IS30-like element IS30 family transposase (47573..46422)
(47647..47570)
phage tail protein (47647..47570)
(47898..47641)
IS3 family transposase (47898..47641)
(47994..48209)
helix-turn-helix transcriptional regulator (47994..48209)
(48368..48177)
hypothetical protein (48368..48177)
hbp (48539..52672)
hbp hemoglobin-binding protease autotransporter Hbp (48539..52672)
(52781..53194)
peptide deformylase (52781..53194)
(54455..53451)
IS110-like element IS5075 family transposase (54455..53451)
(54813..54547)
resolvase (54813..54547)
(56390..54853)
IS66-like element ISEc8 family transposase (56390..54853)
tnpB (56787..56440)
tnpB IS66 family insertion sequence element accessory protein TnpB (56787..56440)
(57164..56784)
IS66 family insertion sequence hypothetical protein (57164..56784)
(58220..57240)
NADPH-dependent L-lysine N(6)-monooxygenase (58220..57240)
(58486..58217)
hypothetical protein (58486..58217)
(59265..58488)
Gfo/Idh/MocA family oxidoreductase (59265..58488)
(59426..59662)
colicin V immunity protein (59426..59662)
cvaC (59640..59951)
cvaC colicin V (59640..59951)
(62235..60121)
peptidase domain-containing ABC transporter (62235..60121)
(63451..62210)
HlyD family secretion protein (63451..62210)
(64166..64363)
toxin-antitoxin system protein (64166..64363)
(64360..64542)
type II toxin-antitoxin system RelE/ParE family toxin (64360..64542)
(64641..64949)
hypothetical protein (64641..64949)
(65300..65491)
hypothetical protein (65300..65491)
(65509..66543)
3-deoxy-7-phosphoheptulonate synthase (65509..66543)
(66464..66664)
phospho-2-dehydro-3-deoxyheptonate aldolase (66464..66664)
(66884..66669)
hypothetical protein (66884..66669)
(67111..66884)
hypothetical protein (67111..66884)
iroN (67409..69586)
iroN siderophore salmochelin receptor IroN (67409..69586)
iroE (70587..69631)
iroE catecholate siderophore esterase IroE (70587..69631)
iroD (71901..70672)
iroD catecholate siderophore esterase IroD (71901..70672)
iroC (75790..72005)
iroC salmochelin/enterobactin export ABC transporter IroC (75790..72005)
iroB (76919..75804)
iroB salmochelin biosynthesis C-glycosyltransferase IroB (76919..75804)
(77381..77118)
hypothetical protein (77381..77118)
(79254..78155)
transposase (79254..78155)
(79367..79549)
hypothetical protein (79367..79549)
(79832..80007)
lysis protein (79832..80007)
iss (80358..80065)
iss increased serum survival lipoprotein Iss (80358..80065)
(80938..81503)
transposase (80938..81503)
(82682..81520)
IS3-like element IS3 family transposase (82682..82421)
(82744..83472)
IS3 family transposase (82744..83472)
(84075..84299)
hypothetical protein (84075..84299)
(84714..85907)
cobalamin biosynthesis protein CobW (84714..85907)
(86085..86234)
IS3 family transposase (86085..86234)
(86544..87933)
ISNCY family transposase (86544..87933)
(87970..88158)
hypothetical protein (87970..88158)
(88168..89109)
hypothetical protein (88168..89109)
tnpA (89432..89238)
tnpA IS200/IS605 family transposase (89432..89238)
(91276..89906)
efflux transporter outer membrane subunit (91276..89906)
macB (93220..91280)
macB MacB family efflux pump subunit (93220..91280)
(94404..93217)
efflux RND transporter periplasmic adaptor subunit (94404..93217)
(95385..95710)
DDE-type integrase/transposase/recombinase (95385..95710)
(97057..95858)
IS3 family transposase (97057..95858)
(97217..97399)
transposase (97217..97399)
(97548..97811)
hypothetical protein (97548..97811)
(98568..98179)
GlcNAc transferase (98568..98179)
(98672..99625)
omptin family outer membrane protease (98672..99625)
(99999..99715)
hypothetical protein (99999..99715)
(100058..101167)
NAD-dependent epimerase/dehydratase family protein (100058..101167)
(101230..102138)
antimicrobial resistance protein Mig-14 (101230..102138)
(102512..102700)
serine/threonine protein kinase (102512..102700)
(102821..103561)
phage integrase family protein (102821..103561)
(104823..103846)
RepB family plasmid replication initiator protein (104823..103846)
(105453..105232)
hypothetical protein (105453..105232)
(105569..105892)
transposase (105569..105892)
(105894..105998)
AAA family ATPase (105894..105998)
(106059..106572)
DUF4113 domain-containing protein (106059..106572)
(107449..106752)
IS1 family transposase (107449..106752)
(107491..107682)
prephenate dehydratase (107491..107682)
sitA (107805..108719)
sitA iron/manganese ABC transporter substrate-binding protein SitA (107805..108719)
sitB (108719..109546)
sitB iron/manganese ABC transporter ATP-binding protein SitB (108719..109546)
sitC (109543..110400)
sitC iron/manganese ABC transporter permease subunit SitC (109543..110400)
sitD (110397..111254)
sitD iron/manganese ABC transporter permease subunit SitD (110397..111254)
(111745..111488)
Tn3 family transposase (111745..111488)
(111743..112156)
phosphopyruvate hydratase (111743..112156)
(112153..112425)
hypothetical protein (112153..112425)
crcB (112497..112877)
crcB fluoride efflux transporter CrcB (112497..112877)
(114450..113257)
MFS transporter (114450..113257)
(114586..116310)
IucA/IucC family siderophore biosynthesis protein (114586..116310)
(116311..117258)
acetyltransferase (116311..117258)
(117258..119000)
IucA/IucC family siderophore biosynthesis protein (117258..119000)
(118997..120274)
L-lysine N6-monooxygenase (118997..120274)
(120356..122557)
TonB-dependent receptor (120356..122557)
(122937..123634)
IS1 family transposase (122937..123634)
(124910..123888)
DNA helicase UvrD (124910..123888)
(126460..124895)
AAA family ATPase (126460..124895)
(126951..126535)
type II toxin-antitoxin system VapC family toxin (126951..126535)
(127178..126948)
AbrB/MazE/SpoVT family DNA-binding domain-containing protein (127178..126948)
(127529..131353)
pcar (127529..131353)
(131814..131398)
type II toxin-antitoxin system VapC family toxin (131814..131398)
(132041..131811)
AbrB/MazE/SpoVT family DNA-binding domain-containing protein (132041..131811)
(132306..132806)
hypothetical protein (132306..132806)
(132819..133592)
hypothetical protein (132819..133592)
(133759..134892)
hypothetical protein (133759..134892)
(135438..134926)
hypothetical protein (135438..134926)
ccdA (136006..136224)
ccdA type II toxin-antitoxin system antitoxin CcdA (136006..136224)
ccdB (136226..136531)
ccdB type II toxin-antitoxin system toxin CcdB (136226..136531)
(136532..137338)
phage integrase family protein (136532..137338)
repE (138090..138845)
repE replication initiation protein RepE (138090..138845)
sopA (139433..140599)
sopA plasmid-partitioning protein SopA (139433..140599)
(140599..141570)
ParB/RepB/Spo0J family plasmid partition protein (140599..141570)
(141677..142132)
hypothetical protein (141677..142132)
(142170..142442)
hypothetical protein (142170..142442)
(142480..143381)
DUF1281 domain-containing protein (142480..143381)
(143385..143690)
hypothetical protein (143385..143690)
(143767..144450)
DNA methylase (143767..144450)
(144451..144672)
hypothetical protein (144451..144672)
(144566..145120)
DUF1380 domain-containing protein (144566..145120)
(145166..145499)
hypothetical protein (145166..145499)
(145815..146340)
DUF1472 domain-containing protein (145815..146340)
(146478..146780)
antirestriction protein (146478..146780)
(146827..147249)
DUF1380 domain-containing protein (146827..147249)
(147246..147437)
hypothetical protein (147246..147437)
(147556..147945)
hypothetical protein (147556..147945)
(148169..147913)
hypothetical protein (148169..147913)
(148089..148208)
single-stranded DNA-binding protein (148089..148208)
(148234..148773)
single-stranded DNA-binding protein (148234..148773)
(148830..149063)
DUF905 domain-containing protein (148830..149063)
(149129..151087)
ParB/RepB/Spo0J family partition protein (149129..151087)
(151142..151576)
conjugation system SOS inhibitor PsiB (151142..151576)
(151573..152292)
plasmid SOS inhibition protein A (151573..152292)
(152567..152725)
type I toxin-antitoxin system Hok family toxin (152567..152725)
(153559..152963)
hypothetical protein (153559..152963)
(153623..153910)
hypothetical protein (153623..153910)
(154029..154850)
DUF945 domain-containing protein (154029..154850)
(155747..155145)
transglycosylase SLT domain-containing protein (155747..155145)
traM (156087..156470)
traM relaxosome protein TraM (156087..156470)
traJ (156662..157309)
traJ conjugal transfer transcriptional regulator TraJ (156662..157309)
traY (157445..157660)
traY conjugal transfer relaxosome protein TraY (157445..157660)
(157703..158068)
pilin (157703..158068)
traL (158083..158394)
traL type IV conjugative transfer system protein TraL (158083..158394)
traE (158416..158982)
traE type IV conjugative transfer system protein TraE (158416..158982)
traK (159026..159697)
traK type-F conjugative transfer system secretin TraK (159026..159697)
(159697..161124)
conjugal transfer protein TraB (159697..161124)
traP (161114..161704)
traP conjugal transfer protein TraP (161114..161704)
(161658..161888)
DUF2689 domain-containing protein (161658..161888)
(161900..162151)
conjugal transfer protein TrbG (161900..162151)
traV (162148..162663)
traV type IV conjugative transfer system lipoprotein TraV (162148..162663)
traR (162798..163019)
traR conjugal transfer protein TraR (162798..163019)
traC (163179..165806)
traC type IV secretion system protein TraC (163179..165806)
trbI (165803..166189)
trbI type-F conjugative transfer system protein TrbI (165803..166189)
traW (166186..166818)
traW type-F conjugative transfer system protein TraW (166186..166818)