INTEGRALL

The Integron Database

IncP-1epsilon Plasmid pHH3408
Accession Number: JQ004407
Source: arable soil 57 days after application of pig manure - Germany: Kaldenkirchen
Journal: Front Microbiol 3, 2 (2012)
Published: 19-JAN-2012
Title: IncP-1e plasmids are important vectors of antibiotic resistance genes in agricultural systems: diversification driven by class 1 integron gene cassettes
Authors: Heuer,H., Thanh Binh,C.T., Jechalke,S., Kopmann,C., Zimmerling,U., Krogerrecklenfort,E., Ledger,T., Gonzalez,B., Top,E.M., Smalla,K.
Remarks: Class 1 integron. This sequence has been manually analyzed by INTEGRALL. In0
Gene Product Sequence
(951..1)
hypothetical protein (951..1)
(1390..977)
conserved hypothetical protein (1390..977)
upf30.5 (1864..1433)
upf30.5 putative outer membrane protein (1864..1433)
trbP (2577..1879)
trbP conjugal transfer protein TrbP (2577..1879)
trbO (2843..2574)
trbO TrbO protein (2843..2574)
trbN (3501..2872)
trbN conjugal transfer protein TrbN (3501..2872)
trbM (4105..3518)
trbM conjugal transfer protein TrbM (4105..3518)
trbL (6057..4141)
trbL TrbL protein (6057..4141)
trbK (6454..6281)
trbK TrbK protein (6454..6281)
trbJ (7234..6464)
trbJ conjugal transfer protein TrbJ (7234..6464)
trbI (8656..7253)
trbI conjugal transfer protein TrbI (8656..7253)
trbH (9115..8660)
trbH conjugal transfer protein TrbH (9115..8660)
trbG (10011..9118)
trbG conjugal transfer protein TrbG (10011..9118)
trbF (10802..10029)
trbF conjugal transfer protein TrbF (10802..10029)
trbE (13357..10799)
trbE conjugal transfer protein TrbE (13357..10799)
trbD (13665..13354)
trbD conjugal transfer protein TrbD (13665..13354)
trbC (14133..13669)
trbC conjugal transfer protein TrbC (14133..13669)
trbB (15109..14147)
trbB conjugal transfer ATPase TrbB (15109..14147)
trbA (15773..15399)
trbA conjugal transfer protein TrbA (15773..15399)
ssb (15885..16226)
ssb single strand DNA binding protein (15885..16226)
trfA (16277..17500)
trfA replication initiation protein (16277..17500)
klcA (18815..19249)
klcA KlcA protein (18815..19249)
klcB (19290..20324)
klcB KlcB protein (19290..20324)
korC (20321..20575)
korC KorC (20321..20575)
kleA (20731..20961)
kleA KleA protein (20731..20961)
kleB (21022..21240)
kleB KleB protein (21022..21240)
kleE (21356..21688)
kleE KleE protein (21356..21688)
kleF (21690..21932)
kleF KleF protein (21690..21932)
incC1 (22089..23165)
incC1 IncC1 protein (22089..23165)
korA (22102..22404)
korA KorA protein (22102..22404)
incC2 (22401..23165)
incC2 IncC2 protein (22401..23165)
korB (23162..24205)
korB KorB protein (23162..24205)
kfrA (24392..25333)
kfrA KfrA protein (24392..25333)
upf54.8 (25502..25849)
upf54.8 conserved hypothetical protein (25502..25849)
upf54.4 (25875..26486)
upf54.4 conserved hypothetical protein (25875..26486)
traM (26976..26536)
traM conjugal transfer protein TraM (26976..26536)
traL (27701..26976)
traL conjugal transfer protein TraL (27701..26976)
traK (28090..27701)
traK TraK protein (28090..27701)
traJ (28430..28804)
traJ conjugal transfer relaxosome component TraJ (28430..28804)
traI (28836..31058)
traI conjugal transfer relaxase TraI (28836..31058)
traH (30382..30744)
traH TraH protein (30382..30744)
traG (31055..32959)
traG conjugal transfer coupling protein TraG (31055..32959)
traF (32956..33492)
traF conjugal transfer peptidase TraF (32956..33492)
traE (33507..35582)
traE putative DNA topoisomerase TraE (33507..35582)
traD (35587..35970)
traD TraD protein (35587..35970)
traC (35974..39681)
traC TraC protein (35974..39681)
tniA (39982..41661)
tniA transposase TniA (39982..41661)
tniBdelta1 (41664..42524)
tniBdelta1 TniBdelta1 (41664..42524)
istA (42635..44149)
istA IstA protein (42635..44149)
istB (44139..44921)
istB IstB protein (44139..44921)
(45597..45097)
acetyltransferase (45597..45097)
sul1 (46564..45725)
sul1 dihydropteroate synthase (46564..45725)
qacEdelta1 (46905..46558)
qacEdelta1 QacEdelta1 (46905..46558)
intI1 (47150..48163)
intI1 integrase IntI1 (47150..48163)
(49076..48510)
putative invertase/recombinase (49076..48510)
(49258..49509)
putative transcriptional regulator (49258..49509)
(49506..49901)
hypothetical protein (49506..49901)
(49913..50449)
putative transposase (49913..50449)
parA (50625..51230)
parA plasmid stablization protein ParA, resolvase (50625..51230)