INTEGRALL

The Integron Database

Salmonella enterica subsp. enterica serovar Typhimurium
Accession Number: KT334335
Source: stool - Hong Kong
Journal: Unpublished
Published: 31-OCT-2015
Title: Inchi2 plasmids mediate dissemination of oqxab in Salmonella typhimurium
Authors: Wong,M.H., Chen,S.
Remarks: Class 1 integrons. In1185 and In641
Promoter: PcS, PcH1
Gene Product Sequence
repHI2 (1..1089)
repHI2 putative replication protein RepHI2 (1..1089)
putative periplasmic protein (5507..3087)
hypothetical protein (6583..5972)
hypothetical protein (6867..6604)
hypothetical protein (7722..6961)
hypothetical protein (8567..7803)
hypothetical protein (8775..8891)
hypothetical protein (8888..9055)
hypothetical protein (9128..11518)
hypothetical protein (11953..12423)
Toxin-plasmid maintenance system killer protein (12473..12769)
hypothetical protein (12778..13959)
hypothetical protein (14367..14744)
hypothetical protein (14839..15267)
hypothetical protein (15332..15589)
hypothetical protein (15561..15716)
hypothetical protein (15745..16353)
putative DNA methyltransferase (16522..17772)
hypothetical protein (18053..18199)
hypothetical protein (18615..18941)
hypothetical protein (19082..19264)
hypothetical protein (19491..20282)
hypothetical protein (20334..20783)
hypothetical protein (20956..23340)
hypothetical protein (23590..23829)
hypothetical protein (23892..24203)
hypothetical protein (24200..24388)
hypothetical protein (24449..24982)
hypothetical protein (25094..25705)
hypothetical protein (25933..26160)
hypothetical protein (26266..26150)
hypothetical protein (26340..26660)
hypothetical protein (27176..27487)
hypothetical protein (27492..27983)
hypothetical protein (28536..28739)
hypothetical protein (28794..29018)
hypothetical protein (29058..29258)
hypothetical protein (29481..29792)
hypothetical protein (30293..30448)
hypothetical protein (31039..31269)
hypothetical protein (31278..31442)
IS150A (31602..32123)
IS150A Putative Transposase A, IS150 (31602..32123)
IS150B (32120..32971)
IS150B Putative Transposase B, IS150 (32120..32971)
hypothetical protein (33515..33637)
hypothetical protein (33850..33647)
hypothetical protein (34252..33896)
hypothetical protein (34908..34306)
hypothetical protein (35949..35005)
hypothetical protein (36302..36448)
hypothetical protein (36459..36635)
hypothetical protein (37051..38235)
hypothetical protein (38301..38582)
hypothetical protein (38657..38773)
hypothetical protein (38809..39045)
hypothetical protein (39166..39462)
hypothetical protein (39507..39944)
hypothetical protein (40006..40548)
hypothetical protein (40713..41081)
hypothetical protein (41273..41422)
hypothetical protein (41514..41816)
hypothetical protein (42173..42457)
hypothetical protein (42523..42876)
hypothetical protein (43136..43014)
nuclease (43894..43163)
putative peptidase (45077..43896)
traJ (45750..45088)
traJ Conjugal Transfer Protein TraJ (45750..45088)
hypothetical protein (46849..45737)
traD (48933..46849)
traD Plasmid conjugative transfer protein TraD (48933..46849)
traI (52082..48933)
traI TraI (52082..48933)
hypothetical protein (52826..52089)
traH (53308..52823)
traH TraH (53308..52823)
hypothetical protein (53483..53331)
hypothetical protein (53787..53924)
hypothetical protein (54067..54867)
trhY (54869..55381)
trhY TrhY (54869..55381)
traF (55975..57021)
traF Plasmid conjugative transfer pilus assembly protein TraF (55975..57021)
trhH (57011..58426)
trhH TrhH (57011..58426)
trhG (58435..62388)
trhG TrhG (58435..62388)
hypothetical protein (62569..63858)
hypothetical protein (64484..63966)
Membrane-bound lytic murein transglycosylase D precursor (65154..64615)
dsbC (65302..66051)
dsbC Thiol:disulfide interchange protein DsbC (65302..66051)
hypothetical protein (66076..66468)
hypothetical protein (66664..66924)
hypothetical protein (67439..66984)
Outer membrane protein assembly factor YaeT precursor (67702..68511)
umuC (69816..68557)
umuC Error-prone, lesion bypass DNA polymerase V (UmuC) (69816..68557)
umuD (70234..69800)
umuD Error-prone repair protein UmuD (70234..69800)
hypothetical protein (70428..71045)
hypothetical protein (71195..71551)
Mobile element protein (71860..71741)
IS26TnpA (71837..72541)
IS26TnpA IS26 Transposase (71837..72541)
oqxR (72643..73122)
oqxR Transcriptional Regulator (72643..73122)
oqxB (76344..73192)
oqxB RND multidrug efflux transporter (76344..73192)
oqxA (77543..76368)
oqxA RND efflux system, membrane fusion protein (77543..76368)
hypothetical protein (77836..77705)
IS26TnpA (77861..78565)
IS26TnpA IS26 Transposase (77861..78565)
NimC/NimA family protein (78900..79292)
blmS (79896..79612)
blmS Bleomycin resistance protein (79896..79612)
IS26TnpA (80896..80192)
IS26TnpA IS26 Transposase (80896..80192)
Tn3 (80976..82262)
Tn3 Mobile element protein (80976..82262)
hypothetical protein (82451..82287)
qacEdelta1 (82423..82638)
qacEdelta1 QacEdelta1 (82423..82638)
sul1 (82632..83471)
sul1 Dihydropteroate synthase (82632..83471)
puromycin N-acetyltransferase-like protein (83599..83802)
Mobile element protein (84036..83920)
IS26TnpA (84027..84731)
IS26TnpA IS26 Transposase (84027..84731)
deltaaadA2 (85360..84677)
deltaaadA2 Truncated aadA2 (85360..84677)
gcuF (85668..85378)
gcuF GcuF (85668..85378)
dfrA12 (86277..85780)
dfrA12 Dihydrofolate reductase (86277..85780)
deltaintI1 (86422..86670)
deltaintI1 Truncated Class I integrase (86422..86670)
IS26TnpA (86682..87386)
IS26TnpA IS26 Transposase (86682..87386)
aph(3') (88337..87576)
aph(3') Aminoglycoside phosphotransferase (88337..87576)
IS26TnpA (88542..89246)
IS26TnpA IS26 Transposase (88542..89246)
short chain dehydrogenase (89479..90342)
hypothetical protein (90380..90625)
hypothetical protein (90776..91003)
sulIII (91094..91885)
sulIII Dihydropteroate synthase (91094..91885)
IS440TnpA (92210..92818)
IS440TnpA IS440 Transposase (92210..92818)
qacH (93397..93065)
qacH QacH (93397..93065)
aadA1a (94358..93567)
aadA1a Spectinomycin 9-O-adenylyltransferase AadA1a (94358..93567)
cmlA2 (95710..94451)
cmlA2 Chloramphenicol resistance protein (95710..94451)
aadA2 (96763..95972)
aadA2 Aminoglycoside phosphotransferase (96763..95972)
psp (97429..96821)
psp Phosphoserine phosphatase (97429..96821)
estX (98367..97525)
estX EstX (98367..97525)
intI (98534..99547)
intI Integron integrase IntIPac (98534..99547)
tnpM (99900..100100)
tnpM transposon Tn21 modulator protein (99900..100100)
Aldehyde dehydrogenase (100879..100190)
Tn21 (100789..103740)
Tn21 Tn21 Transposase (100789..103740)
hypothetical protein (103818..104150)
IS26TnpA (104939..104235)
IS26TnpA IS26 Transposase (104939..104235)
IS91TnpA (104997..105833)
IS91TnpA IS91 Transposase (104997..105833)
Phosphoglucosamine mutase (106311..106009)
sul2 (107213..106398)
sul2 Dihydropteroate synthase (107213..106398)
ISAba1 (107303..107872)
ISAba1 Mobile element protein ISAba1 (107303..107872)
IS4 (107959..108393)
IS4 IS4 family-like transposase (107959..108393)
dmpL (109075..108590)
dmpL Phenol hydroxylase, P1 oxygenase component DmpL (109075..108590)
dmpK (109247..109113)
dmpK Phenol hydroxylase, assembly protein DmpK (109247..109113)
Tn2 (110902..109301)
Tn2 Tn2 Transposase (110902..109301)
IS6 family-like transposase (110886..111638)
IS6 family-like transposase IS6 family-like transposase (110886..111638)
hph (113085..112060)
hph hygromycin-B-phosphotransferase (113085..112060)
aac(3')-IVa (114117..113314)
aac(3')-IVa putative aminoglycoside N3'-acetyltransferase protein (114117..113314)
IS26TnpA (114191..114901)
IS26TnpA IS26 Transposase (114191..114901)
aac(6')-lb-cr (114907..115599)
aac(6')-lb-cr 6'-N-acetyltransferase (114907..115599)
blaOXA-1 (115685..116560)
blaOXA-1 Beta-lactamase OXA-1 (115685..116560)
catB3 (116698..117330)
catB3 Chloramphenicol acetyltransferase (116698..117330)
arr3 (117415..117867)
arr3 rifampin ADP-ribosyl transferase (117415..117867)
qacEdelta1 (118090..118437)
qacEdelta1 QacEdelta1 (118090..118437)
sul1 (118431..119270)
sul1 Dihydropteroate synthase (118431..119270)
puromycin N-acetyltransferase-like protein (119398..119601)
IS26TnpA (120423..119719)
IS26TnpA IS26 Transposase (120423..119719)
Tn3 (120414..122003)
Tn3 Tn3-family transposase (120414..122003)
hypothetical protein (122254..122463)
hypothetical protein (122840..123157)
hypothetical protein (123615..123208)
hypothetical protein (124106..123645)
hypothetical protein (124673..124443)
hypothetical protein (125289..125035)
hypothetical protein (125568..125335)
hypothetical protein (125633..125764)
hypothetical protein (126419..125790)
Thermonuclease family protein (127114..126689)
hypothetical protein (127086..127217)
dcm (127419..128846)
dcm DNA-cytosine methyltransferase (127419..128846)
hypothetical protein (128907..129074)
hypothetical protein (129097..130416)
ATP/GTP Binding Protein (131901..130696)
hypothetical protein (132716..131898)
hypothetical protein (133145..133258)
hypothetical protein (133359..133739)
tgtA5 cluster protein 2 (133797..134462)
hypothetical protein (134522..134977)
hypothetical protein (135019..135255)
hypothetical protein (135462..135575)
h-ns (135753..136157)
h-ns DNA-binding protein H-NS (135753..136157)
hypothetical protein (136191..136412)
hypothetical protein (136702..136499)
hypothetical protein (136892..136764)
putative exported protein (137733..138719)
putative DNA helicase (138716..140755)
hypothetical protein (141003..140758)
hypothetical protein (141367..141068)
Type I restriction-modification system, DNA- methyltransferase subunit M (141658..141416)
hypothetical protein (142003..142131)
hypothetical protein (142537..142112)
putative DNA-binding protein (143606..142791)
hypothetical protein (144029..143619)
hypothetical protein (144174..144040)
hypothetical protein (144337..144131)
hipA (145723..144398)
hipA HipA protein (145723..144398)
hipB (146024..145728)
hipB Transcriptional regulator, ArsR family (146024..145728)
hypothetical protein (147017..146625)
hypothetical protein (147360..147731)
hypothetical protein (147823..148014)
hypothetical protein (148064..148345)
hypothetical protein (148817..148686)
terF (150149..148908)
terF putative phage inhibition, colicin resistance and tellurite resistance protein (150149..148908)
terE (151153..150578)
terE Tellurium resistance protein TerE (151153..150578)
terD (151799..151221)
terD Tellurium resistance protein TerD (151799..151221)
terC (152888..151848)
terC Integral membrane protein TerC (152888..151848)
terB (153366..152911)
terB Tellurite resistance protein TerB (153366..152911)
terA (154546..153389)
terA Tellurium resistance protein TerA (154546..153389)
terZ (155127..154546)
terZ Tellurium resistance protein (155127..154546)
Carbamoylphosphate synthase large subunit (155451..156509)
Adenine/guanine phosphoribosyltransferase-related PRPP-binding protein (156519..157661)
hypothetical protein (157654..158427)
putative ATP/GTP-binding protein (158429..159508)
Citrate lyase beta chain (159508..160464)
hypothetical protein (160475..161683)
terW (161701..162168)
terW TerW (161701..162168)
hypothetical protein (162472..162338)
hypothetical protein (162473..162634)
terY1 (162676..163269)
terY1 TerY1 (162676..163269)
terY2 (163292..163933)
terY2 Putative tellurium resistance protein (163292..163933)
hypothetical protein (163933..164571)
hypothetical protein (164657..165697)
hypothetical protein (165697..167334)
Putative kinase protein (167306..168859)
hypothetical protein (169904..169026)
Cys-tRNA(Pro) deacylase YbaK (170681..170469)
putative recombinase (170852..172027)
hypothetical protein (172234..172049)
hypothetical protein (173234..172329)
hypothetical protein (174224..173244)
hypothetical protein (174330..174446)
hypothetical protein (174693..174508)
hypothetical protein (175296..174760)
hypothetical protein (175627..175370)
hypothetical protein (176545..176270)
hypothetical protein (177765..176809)
hypothetical protein (178875..177937)
hypothetical protein (179784..178942)
hypothetical protein (179863..179744)
hypothetical protein (180867..179932)
hypothetical protein (181816..180938)
hypothetical protein (182098..181895)
hypothetical protein (183919..182687)
hypothetical protein (184254..184033)
hypothetical protein (186338..184326)
hypothetical protein (187543..186416)
hypothetical protein (187780..187607)
norQ (188970..187912)
norQ Nitric oxide reductase activation protein NorQ (188970..187912)
hypothetical protein (190005..189028)
hypothetical protein (190443..190066)
hypothetical protein (191373..190501)
hypothetical protein (191685..191530)
uvrD (193552..191768)
uvrD ATP-dependent DNA helicase UvrD/PcrA (193552..191768)
IncH1 plasmid conjugative transfer protein Orf4 (193732..194604)
traN (197821..194633)
traN Plasmid conjugative transfer protein TraN (197821..194633)
traU (198898..197840)
traU Plasmid conjugative transfer pilus assembly protein TraU (198898..197840)
hypothetical protein (199038..198904)
traW (200551..199040)
traW Plasmid conjugative transfer pilus assembly protein TraW (200551..199040)
hypothetical protein (201050..200538)
IncH1 plasmid conjugative transfer protein Orf9 (205632..201328)
htdK (206306..205752)
htdK IncH1 plasmid conjugative transfer protein HtdK (206306..205752)
htdF (206740..206315)
htdF IncH1 plasmid conjugative transfer protein HtdF (206740..206315)
htdA (207182..206730)
htdA IncH1 plasmid conjugative transfer protein HtdA (207182..206730)
parR (208224..207586)
parR IncH1 plasmid conjugative transfer partition protein ParR (208224..207586)
parM (209273..208236)
parM IncH1 plasmid conjugative transfer partition protein ParM (209273..208236)
hypothetical protein (209590..209429)
trhO (209637..210584)
trhO IncH1 plasmid conjugative transfer protein TrhO (209637..210584)
IncH1 plasmid conjugative transfer protein Orf16 (210581..211417)
IncH1 plasmid conjugative transfer protein Orf17 (211410..211931)
trhZ (211928..212317)
trhZ IncH1 plasmid conjugative transfer protein TrhZ (211928..212317)
parB (213383..212379)
parB Partitioning protein ParB (213383..212379)
parA (214633..213380)
parA Partitioning protein ParA (214633..213380)
hypothetical protein (215416..215261)
hypothetical protein (216864..216718)
hypothetical protein (217371..217210)
hypothetical protein (217425..217700)
hypothetical protein (217787..217936)
hypothetical protein (218294..218458)
traC (221151..218470)
traC Plasmid conjugative transfer pilus assembly protein TraC (221151..218470)
trhV (222110..221160)
trhV IncH1 plasmid conjugative transfer protein TrhV (222110..221160)
htdT (223100..222120)
htdT Thiol:disulfide involved in conjugative transfer (223100..222120)
htdV (223473..222991)
htdV IncH1 plasmid conjugative transfer protein HtdV (223473..222991)
traB (224836..223481)
traB Plasmid conjugative transfer pilus assembly protein TraB (224836..223481)
htdO (225287..224826)
htdO IncH1 plasmid conjugative transfer protein HtdO (225287..224826)
hypothetical protein (226560..225289)
traE (227348..226560)
traE Plasmid conjugative transfer pilus assembly protein TraE (227348..226560)
trhL (227710..227360)
trhL IncH1 plasmid conjugative transfer protein TrhL (227710..227360)
trhA (228081..227728)
trhA IncH1 plasmid conjugative transfer pilin precursor TrhA (228081..227728)
hypothetical protein (228804..228604)
hypothetical protein (228985..228869)
hypothetical protein (229201..228995)
repFIA (230105..229230)
repFIA RepFIB replication protein A (230105..229230)
hypothetical protein (230582..231637)
hypothetical protein (231655..231855)
hypothetical protein (231852..232568)
hypothetical protein (232803..233657)
dam (234478..233666)
dam Methyl-directed repair DNA adenine methylase (234478..233666)
hypothetical protein (234848..236011)
hypothetical protein (236259..237950)
hypothetical protein (237947..238123)
hypothetical protein (238250..238633)
hypothetical protein (238614..238895)
hypothetical protein (239396..238953)
IS2B (240470..239565)
IS2B IS2 Transposase orfB (240470..239565)
IS2A (240793..240428)
IS2A IS2 Transposase orfA (240793..240428)
hypothetical protein (241288..243744)
hypothetical protein (244526..244663)