INTEGRALL

The Integron Database

Shigella dysenteriae 1
Accession Number: KT754165
Source:
Journal: Nature Microbiology
Published: Nature Microbiology 1, Article number: 1
Title: Global phylogeography and evolutionary history of Shigella dysenteriae type 1
Authors: Njamkepo,E., Fawal,N., Tran-Dien,A., Hawkey,J., Strockbine,N., Jenkins,C., Talukder,K.A., Bercion,R., Kuleshov,K., Kolinska,R., Russe,J.E., Kaftyreva,L., Accou-Demartin,M., Karas,A., Vandenberg,O., Mather,A.E., Mason,C.J., Page,A.J., Ramamurthy,T., Bizet,C., Gamian,A., Carle,I., Sow,A.G., Bouchier,C., Wester,A.L., Lejay-Collin,M., Fonkoua,M.-C., Hello,S.L., Blaser,M.J., Jernberg,C., Ruckly,C., Merens,A., Page,A.-L., Aslett,M., Roggentin,P., Fruth,A., Denamur,E., Venkatesan,M., Bercovier,H., Bodhidatta,L., Chiou,C.-S., Clermont,D., Colonna,B., Egorova,S., Pazhani,G.P., Ezernitchi,A.V., Guigon,G., Harris,S.R., Izumiya,H., Korzeniowska-Kowal,A., Lutynska,A., Gouali,M., Grimont,F., Langendorf,C., Marejkova,M., Peterson,L.A., Perez-Perez,G., Ngandjio,A., Podkolzin,A., Souche,E., Makarova,M., Shipulin,G.A., Ye,C., Zemlickova,H., Herpay,M., Grimont,P.A., Parkhill
Remarks: Class 1 integron. In2-67
Gene Product Sequence
hypothetical protein (2832..2506)
Bores hole in peptidoglycan layer allowing type IV secretion complex assembly to occur (VirB1) (3464..2877)
hypothetical protein (3643..3467)
IncQ plasmid conjugative transfer protein TraG (4035..3820)
hypothetical protein (4325..4032)
IncQ plasmid conjugative transfer DNA nicking endonuclease TraR (5631..4402)
hypothetical protein (6138..5635)
hypothetical protein (6362..6487)
hypothetical protein (6725..6501)
hypothetical protein (6888..6751)
hypothetical protein (7314..6949)
hypothetical protein (7705..7406)
hypothetical protein (8324..8097)
hypothetical protein (8562..8311)
hypothetical protein (9101..8559)
DnaJ-class molecular chaperone (9720..9283)
hypothetical protein (9974..9795)
hypothetical protein (10037..10189)
putative antitoxin (10709..10359)
putative toxin (11041..10706)
hypothetical protein (11384..11572)
hypothetical protein (12118..12237)
Plasmid replication protein (12583..12924)
Plasmid replication protein (12960..13358)
Plasmid replication protein (13382..13588)
hypothetical protein (13654..14058)
hypothetical protein (14055..14192)
hypothetical protein (14194..14721)
hypothetical protein (15005..14784)
hypothetical protein (15243..15028)
hypothetical protein (15544..15293)
hypothetical protein (15883..15581)
Chromosome partitioning protein ParA (16708..16049)
Resolvase (17709..16813)
hypothetical protein (18064..18177)
hypothetical protein (18846..18193)
DNA-binding protein H-NS (19417..18953)
hemolysin expression modulating protein (19639..19433)
DNA topoisomerase III (20574..19636)
dfrA1 (21121..20648)
dfrA1 DfrA1 (21121..20648)
Integron integrase IntI2 (21453..21989)
Cell division protein FtsH (24264..23314)
putative nuclease (24840..24346)
hypothetical protein (25145..24837)
hypothetical protein (25484..25269)
IncN plasmid KikA protein (25844..25539)
hypothetical protein (26247..25828)
Type IV secretion system protein VirD4 (28121..26259)
ATPase provides energy for both assembly of type IV secretion complex and secretion of T-DNA complex (VirB11) (29136..28108)
Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB10) (30256..29138)
Forms the bulk of type IV secretion complex that spans outer membrane and periplasm (VirB9) (31154..30249)
Inner membrane protein forms channel for type IV secretion of T-DNA complex2C VirB8 (31840..31154)
hypothetical protein (31961..31833)
hypothetical protein (32177..31974)
hypothetical protein (32358..32179)
Inner membrane protein of type IV secretion of T-DNA complex2C VirB6 (33449..32355)
Minor pilin of type IV secretion complex (VirB5) (34177..33461)
Inner membrane protein forms channel for type IV secretion of T-DNA complex2C VirB3 / ATPase required for both assembly of type IV secretion complex and secretion of T-DNA complex2C VirB4 (34401..34189)