INTEGRALL

The Integron Database

Salmonella enterica subsp. enterica serovar Typhimurium
Accession Number: LN794248
Source: n.m.
Journal: Unpublished
Published: 02-FEB-2015
Title: Ceftriaxone resistant Salmonella Typhimurium Sequence Type 313 from Kenyan patients is associated with blaCTX-M-15 gene and multiple copies of class 1 integrons borne on a novel IncHI2 plasmid
Authors: Kariuki,S., Okore,C., Kiiru,J., Njoroge,S., Omuse,G., Langridge,G., Kingsley,R.A., Dougan,G., Revathi,G.
Remarks: Class 1 integrons. In705 and In1128
Promoter: PcWTGN-10, PcH1
Gene Product Sequence
yhcR_1 (435..950)
yhcR_1 putative nuclease (435..950)
hypothetical protein (953..1315)
hypothetical protein (1293..1847)
hypothetical protein (1895..2209)
hypothetical protein (2283..2540)
hypothetical protein (2876..3130)
hypothetical protein (3168..3455)
hypothetical protein (3525..3770)
hypothetical protein (3886..4137)
ychM_1 (4628..6106)
ychM_1 putative sulfate permease (4628..6106)
Universal stress protein family (6125..6952)
arsC_1 (7437..7012)
arsC_1 Arsenate reductase (7437..7012)
arsB_1 (8739..7450)
arsB_1 Arsenic efflux pump protein (8739..7450)
arsR_1 (9105..8785)
arsR_1 Arsenical resistance operon repressor (9105..8785)
arsH_1 (9192..9896)
arsH_1 arsenical resistance protein (9192..9896)
transposase (11332..9929)
hypothetical protein (12433..11627)
hypothetical protein (12891..12451)
FRG domain (14405..13044)
hypothetical protein (15222..14419)
transposase (16639..15281)
hypothetical protein (16849..17166)
hypothetical protein (17189..17494)
V8-like Glu-specific endopeptidase,Trypsin (17539..18210)
hypothetical protein (18292..18468)
hypothetical protein (18668..19075)
hypothetical protein (19551..19126)
IS5 (20361..19609)
IS5 IS5 transposase,Transposase DDE domain (20361..19609)
hypothetical protein (20386..20661)
hypothetical protein (20853..20635)
hypothetical protein (21511..21020)
hypothetical protein (22111..21596)
hypothetical protein (26011..22676)
hypothetical protein (26587..26234)
hypothetical protein (27349..26741)
umuD (27543..27977)
umuD Error-prone repair protein UmuD (27543..27977)
umuC (27967..29220)
umuC DNA-directed DNA polymerase (27967..29220)
putative DSBA oxidoreductase (30075..29266)
hypothetical protein (30182..30793)
hypothetical protein (31275..30853)
hypothetical protein (31701..31309)
dsbC (32475..31726)
dsbC putative thiol:disulfide interchange protein (32475..31726)
conjugal transfer protein (32623..33162)
hypothetical protein (33245..33802)
hypothetical protein (33926..34987)
hypothetical protein (34997..35503)
type IV conjugative transfer system protein (39576..35626)
TraH (41000..39585)
TraH conjugal transfer pilus assembly protein (41000..39585)
TraF (42036..40990)
TraF conjugal pilus assembly protein (42036..40990)
hypothetical protein (43140..42628)
hypothetical protein (43942..43142)
hypothetical protein (44702..45187)
hypothetical protein (45184..45921)
PFGI-1 (45931..49077)
PFGI-1 integrating conjugative element relaxase (45931..49077)
TraD (49077..51161)
TraD Type IV secretory pathway, VirD4 components (49077..51161)
hypothetical protein (51161..52270)
TraJ (52257..52919)
TraJ TraJ (52257..52919)
sppA (52930..54111)
sppA peptidase-like protein (52930..54111)
Nuclease-related domain (54113..54844)
hypothetical protein (55484..55131)
hypothetical protein (55834..55550)
hypothetical protein (56490..56191)
hypothetical protein (57291..56923)
hypothetical protein (58053..57517)
hypothetical protein (58558..58121)
hypothetical protein (58899..58603)
hypothetical protein (59735..59034)
hypothetical protein (60331..60050)
ParB (61581..60397)
ParB DNA-binding plasmid partitioning protein (61581..60397)
hypothetical protein (62174..61998)
hypothetical protein (62685..63629)
hypothetical protein (63728..64327)
hypothetical protein (64387..64737)
hypothetical protein (64784..64987)
hypothetical protein (65269..65589)
hypothetical protein (67316..66711)
hypothetical protein (67814..67533)
hypothetical protein (68136..67960)
hypothetical protein (68501..68190)
hypothetical protein (68924..68724)
hypothetical protein (69188..68964)
hypothetical protein (69446..69243)
hypothetical protein (69919..69626)
Protein of unknown function (DUF3085) (70490..69999)
Enterobacterial protein of unknown function (DUF957) (70806..70495)
hypothetical protein (71643..71323)
hypothetical protein (72049..71822)
hypothetical protein (73117..72224)
TelA-1 (74219..73107)
TelA-1 Toxic anion resistance protein (74219..73107)
TelA-2 (75001..74216)
TelA-2 Toxic anion resistance protein (75001..74216)
hypothetical protein (75519..75388)
hypothetical protein (76204..75596)
HNH endonuclease (76851..76318)
hypothetical protein (77100..76906)
hypothetical protein (77408..77097)
hypothetical protein (77710..77471)
Predicted phosphoadenosine phosphosulfate sulfotransferase (80344..77960)
hypothetical protein (80959..80510)
hypothetical protein (81801..81010)
hypothetical protein (82288..82031)
hypothetical protein (82680..82354)
hypothetical protein (83243..82923)
pvuIIM (84788..83538)
pvuIIM DNA methylase (84788..83538)
spermidine synthase (85567..84959)
hypothetical protein (85980..85723)
hypothetical protein (86473..86045)
hypothetical protein (86942..86565)
hypothetical protein (88529..87348)
higB-1 (88834..88538)
higB-1 Plasmid maintenance system killer protein (88834..88538)
hypothetical protein (89354..88884)
Protein of unknown function (DUF3607) (92178..89788)
hypothetical protein (92832..92581)
hypothetical protein (93053..92865)
hypothetical protein (93297..93040)
hypothetical protein (93721..93290)
hypothetical protein (94349..93825)
hypothetical protein (94672..95436)
taqIM (95517..96278)
taqIM putative methyltransferase (95517..96278)
hypothetical protein (96372..96635)
hypothetical protein (96679..97266)
Protein of unknown function (DUF3607) (97731..100151)
hypothetical protein (101833..101177)
repHI2 (103317..102229)
repHI2 RepFIB replication protein A (103317..102229)
Protein of unknown function (DUF3607) (106881..104425)
hypothetical protein (107254..107880)
hypothetical protein (108219..107938)
hypothetical protein (108661..108206)
hypothetical protein (108886..108710)
hypothetical protein (110574..108883)
hypothetical protein (110768..110514)
DNA-binding plasmid partitioning protein (111985..110822)
dam (112355..113167)
dam DNA adenine methylase (112355..113167)
hypothetical protein (114030..113176)
hypothetical protein (114981..114265)
hypothetical protein (115178..114978)
DNA-binding plasmid partitioning protein (116250..115198)
repB_1 (116727..117602)
repB_1 initiator replication protein (116727..117602)
hypothetical protein (118028..118228)
trhA (118751..119104)
trhA hypothetical protein (118751..119104)
trhL (119212..119472)
trhL hypothetical protein (119212..119472)
trhE (119484..120272)
trhE conjugal transfer pilus assembly protein (119484..120272)
trhK (120272..121543)
trhK TraK protein (120272..121543)
htdO (121545..122006)
htdO hypothetical protein (121545..122006)
TraB (121996..123351)
TraB conjugal transfer pilus assembly protein (121996..123351)
htdV (123359..123841)
htdV putative outer membrane protein (123359..123841)
htdT (123855..124712)
htdT hypothetical protein (123855..124712)
trhV (124722..125672)
trhV type IV conjugative transfer system protein (124722..125672)
traC (125681..128362)
traC conjugal transfer ATP-binding protein (125681..128362)
hypothetical protein (131168..131314)
hypothetical protein (131790..131650)
parA (132201..133454)
parA Plasmid partition protein A (132201..133454)
parB (133451..134455)
parB plasmid partition protein B (133451..134455)
trhZ (134906..134517)
trhZ hypothetical protein (134906..134517)
hypothetical protein (135424..134903)
hypothetical protein (136253..135417)
TrhO (137197..136250)
stbA (137561..138598)
stbA mediator of plasmid stability (137561..138598)
parR (138610..139122)
parR hypothetical protein (138610..139122)
transposase (139144..140112)
htdA (140717..141169)
htdA incHI2 transfer repressor (140717..141169)
htdF (141159..141584)
htdF hypothetical protein (141159..141584)
putative plasmid transfer protein (141566..142147)
Protein of unknown function (DUF3607) (142267..146571)
hypothetical protein (146726..146466)
trhF (146849..147361)
trhF signal peptidase I (146849..147361)
trhW (147348..148859)
trhW conjugal transfer pilus assembly protein (147348..148859)
hypothetical protein (148861..148995)
trhU (148998..150059)
trhU conjugal transfer pilus assembly protein (148998..150059)
traN (150078..153266)
traN conjugal transfer mating pair stabilization protein (150078..153266)
hypothetical protein (154167..153295)
uvrD (154347..156131)
uvrD DNA-dependent helicase II (154347..156131)
hypothetical protein (156526..157398)
hypothetical protein (157456..157833)
hypothetical protein (157894..158871)
porphyrin biosynthetic protein (158929..159987)
hypothetical protein (160119..160292)
Protein of unknown function (DUF3150) (160356..161483)
von Willebrand factor, type A (161561..163567)
hypothetical protein (163640..163861)
putative phage DNA primase (163975..165207)
hypothetical protein (165477..165998)
hypothetical protein (166077..166955)
hypothetical protein (167025..167960)
hypothetical protein (168029..168949)
hypothetical protein (169016..169636)
hypothetical protein (169676..169954)
hypothetical protein (170126..171082)
hypothetical protein (171346..171621)
hypothetical protein (171792..172256)
hypothetical protein (172264..172521)
hypothetical protein (172595..173131)
hypothetical protein (173148..173594)
putative DNA replication terminus site-binding protein (173685..174647)
hypothetical protein (174657..175562)
hypothetical protein (175513..175842)
xerD (177039..175864)
xerD putative recombinase (177039..175864)
hha (177209..177421)
hha haemolysin expression modulating protein (177209..177421)
hypothetical protein (177782..178864)
putative protein kinase (180586..179030)
hypothetical protein (182192..180555)
terY3 (183232..182192)
terY3 von Willebrand factor type A domain protein (183232..182192)
terY2 (183955..183317)
terY2 von Willebrand factor type A domain protein (183955..183317)
terX (184596..183955)
terX tellurium resistance protein (184596..183955)
terY1 (185257..184619)
terY1 tellurite resistance protein (185257..184619)
hypothetical protein (185415..185254)
terW (186187..185720)
terW ribbon-helix-helix protein, copG family (186187..185720)
hypothetical protein (187413..186205)
Citrate lyase beta subunit (188380..187424)
putative ATP-binding protein (189459..188380)
Predicted hydrolase (HAD superfamily) (190234..189461)
Protein of unknown function (DUF3706) (191369..190227)
carbamoyl phosphate synthase-like protein (192437..191379)
terZ (192758..193339)
terZ Bacterial stress protein (192758..193339)
terA (193339..194496)
terA tellurium resistance protein (193339..194496)
terB (194519..194974)
terB Tellurite resistance protein (194519..194974)
terC (194997..196037)
terC integral membrane protein (194997..196037)
terD (196086..196664)
terD Bacterial stress protein (196086..196664)
terE (196733..197308)
terE tellurium resistance protein (196733..197308)
terF (197737..198978)
terF Bacterial stress protein (197737..198978)
hypothetical protein (199069..199524)
hypothetical protein (199956..199765)
hypothetical protein (200389..200048)
ATP-dependent DNA helicase Rep (201944..201633)
IS4321 (203294..202290)
IS4321 Transposase IS116/IS110/IS902 family (203294..202290)
tniA (203444..205126)
tniA Transposon Tn7 transposition protein tnsB (203444..205126)
tniB (205129..206037)
tniB Bacterial TniB protein (205129..206037)
tniQ (206034..207251)
tniQ TniQ (206034..207251)
tniR (207312..207926)
tniR DNA-invertase hin (207312..207926)
Domain of unknown function (DUF3330) (208168..207965)
putative mercury resistance protein (208537..208301)
merD (208899..208534)
merD transcriptional regulator MerD (208899..208534)
merB (209649..209011)
merB Alkylmercury lyase (209649..209011)
hypothetical protein (209685..209897)
merR (209947..210381)
merR MerR family transcriptional regulator (209947..210381)
Transposase IS116/IS110/IS902 family (210460..211464)
DNA polymerase (211909..212199)
Uncharacterized conserved protein (212196..212597)
hypothetical protein (212548..212766)
Integrase core domain (213330..212680)
hypothetical protein (214353..213997)
hypothetical protein (215235..214387)
Transposase IS116/IS110/IS902 family (215404..216408)
integrase (216766..216590)
sul2 (217096..217911)
sul2 dihydropteroate synthase (217096..217911)
strA (217972..218775)
strA putative APH(3'') streptomycin phosphotransferase (217972..218775)
strB (218775..219611)
strB Aminoglycoside/hydroxyurea antibiotic resistance kinase (218775..219611)
transposase (220122..219583)
bla TEM1 (221192..220332)
bla TEM1 beta-lactamase (221192..220332)
Tn3 (221932..221375)
Tn3 Resolvase/TnpR (221932..221375)
transposase (221967..222224)
Integrase core domain (222763..222167)
hypothetical protein (223526..223218)
hypothetical protein (223574..224074)
hypothetical protein (224071..224442)
hin_2 (224436..224993)
hin_2 Resolvase (224436..224993)
IS4321 (225072..226076)
IS4321 Transposase IS116/IS110/IS902 family (225072..226076)
yjcD (228018..226258)
yjcD ATP-dependent DNA helicase (228018..226258)
hypothetical protein (229001..228015)
hypothetical protein (229922..230314)
hypothetical protein (230973..231629)
hypothetical protein (231832..232329)
hypothetical protein (232334..233722)
hipB (234120..234416)
hipB antitoxin HipB (234120..234416)
hipA (234421..235746)
hipA Serine/threonine-protein kinase (234421..235746)
hypothetical protein (235807..236013)
hypothetical protein (236114..236524)
hypothetical protein (236537..237352)
hypothetical protein (237605..238030)
hypothetical protein (238579..238887)
hypothetical protein (238903..239760)
hypothetical protein (239822..240025)
stpA (240771..240367)
stpA DNA-binding protein H-NS (240771..240367)
hypothetical protein (241242..240949)
hypothetical protein (241573..241268)
hypothetical protein (242000..241545)
IS5 transposase,Transposase DDE domain (243256..242276)
hypothetical protein (243925..243302)
hypothetical protein (244363..243983)
IS26 (246260..245325)
IS26 Transposase and inactivated derivatives (246260..245325)
tnpA (248125..246275)
tnpA transposase (248125..246275)
transposase (248450..249064)
hypothetical protein (249567..249091)
tetR(C) (250467..249799)
tetR(C) Tetracycline repressor protein class B from transposon Tn10 (250467..249799)
tetA(C) (250568..251767)
tetA(C) Tetracycline resistance protein (250568..251767)
ydiB (252282..252785)
ydiB shikimate/quinate 5-dehydrogenase (252282..252785)
tranposase,Integrase core domain (252822..253526)
Restriction endonuclease (253615..254052)
hypothetical protein (254057..254263)
hypothetical protein (254373..254570)
dcm_1 (254645..256078)
dcm_1 DNA cytosine methylase (254645..256078)
ecoRIIR (257326..256112)
ecoRIIR Type-2 restriction enzyme EcoRII (257326..256112)
TnpA6100 (258351..257587)
TnpA6100 transposase (258351..257587)
resolvease/recombinase (258380..258814)
dfrA14 (259454..258981)
dfrA14 Dihydrofolate reductase type 1 (259454..258981)
inti1 (259610..260623)
inti1 Tyrosine recombinase XerD (259610..260623)
hypothetical protein (261016..261132)
IS26 (261157..261693)
Integrase core domain (261718..262434)
aac(6')-lb (262533..263132)
aac(6')-lb putative aminoglycoside N(6')-acetyltransferase (Amikacin resistance protein) (AAC(6')),Bifunctional AAC/APH,Acetyltransferase (GNAT) family (262533..263132)
blaOXA-30 (263263..264093)
blaOXA-30 Beta-lactamase OXA-1 precursor (263263..264093)
catB3 (264231..264779)
catB3 Chloramphenicol acetyltransferase (264231..264779)
Tnp26 (265429..264725)
Tnp26 transposase (265429..264725)
aacC3 (265536..266396)
aacC3 SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein yokD (265536..266396)
tmrB (266409..266951)
tmrB Tunicamycin resistance protein (266409..266951)
Transposase (267043..267354)
integrase catalytic subunit,Integrase core domain (267351..268199)
Integrase core domain (268849..268145)
Integrase core domain (268322..269092)
Tn3 (270911..268896)
Tn3 transposase (270911..268896)
Tryptophan synthase subunit beta like protein (271231..271503)
blaCTX-M-15 (272425..271550)
blaCTX-M-15 Beta-lactamase CTX-M-15 (272425..271550)
ISEcp1 (273943..272681)
ISEcp1 transposase,Transposase DDE domain (273943..272681)
yghA_1 (274131..274424)
yghA_1 Uncharacterized oxidoreductase yghA (274131..274424)
Integrase core domain (274492..275103)
intl1 (276103..275090)
intl1 Tyrosine recombinase XerD (276103..275090)
aadA1 (276261..277040)
aadA1 Streptomycin 3''-adenylyltransferase (276261..277040)
insA (277560..277183)
insA IS1 transposase (277560..277183)
insB (277632..277847)
insB hypothetical protein (277632..277847)
catA1 (278159..278833)
catA1 Chloramphenicol acetyltransferase (278159..278833)
insB (279115..278900)
insB hypothetical protein (279115..278900)
insA (279187..279564)
insA IS1 transposase (279187..279564)
cusS (279629..280795)
cusS copper resistant sensor kinase (279629..280795)
pcoE (281013..281447)
pcoE copper-binding protein (281013..281447)
rcnA (282820..281705)
rcnA nickel/cobalt efflux protein (282820..281705)
rcnR (282943..283215)
rcnR transcriptional repressor (282943..283215)
YdiA-1 (283681..284499)
YdiA-1 YdiA-1 (283681..284499)
chromosome segregation protein SMC (284496..285701)
hypothetical protein (285968..285765)
Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (287300..285981)
hypothetical protein (287490..287323)
dcm_2 (288978..287551)
dcm_2 DNA cytosine methylase (288978..287551)
yhcR_2 (289193..289708)
yhcR_2 putative nuclease (289193..289708)
hypothetical protein (289654..290607)
hypothetical protein (290655..290969)
hypothetical protein (291043..291300)
hypothetical protein (291589..291699)
hypothetical protein (291638..291892)
hypothetical protein (291930..292217)
hypothetical protein (292287..292532)
hypothetical protein (292648..292899)
ychM_2 (293391..294869)
ychM_2 putative sulfate permease (293391..294869)
SfpB (294888..295715)
SfpB Universal stress protein family (294888..295715)
arsC_2 (296050..295775)
arsC_2 Arsenate reductase (296050..295775)
arsB_2 (296924..296274)
arsB_2 Arsenic efflux pump protein (296924..296274)
arsB_3 (297190..296924)
arsB_3 arsenical pump membrane protein (297190..296924)
arsB_4 (297498..297151)
arsB_4 Arsenic efflux pump protein (297498..297151)
arsR_2 (297863..297498)
arsR_2 Arsenical resistance operon repressor (297863..297498)
arsH_2 (297949..298266)
arsH_2 arsenical resistance protein (297949..298266)
arsH_3 (298263..298652)
arsH_3 arsenical resistance protein (298263..298652)
transposase (299135..298713)
transposase (300082..299507)