INTEGRALL

The Integron Database

Escherichia coli
Accession Number: LN850163
Source: n.m.
Journal: Unpublished
Published: 31-JUL-2015
Title: Characterisation of E. coli isolates and blaCTX-M harbouring plasmids isolated from dairy cattle in the UK
Authors: Boinett,C.J., AbuOun,M., Woodward,M.J., Anjum,M.F.
Remarks: Class 1 integron. In54
Promoter: PcH1
Gene Product Sequence
iutA (2669..471)
iutA Iron-regulated outer membrane proteins (2669..471)
iucD (4031..2754)
iucD L-lysine 6-monooxygenase (4031..2754)
iucC (5770..4028)
iucC Aerobactin synthase IucC (5770..4028)
iucB (6717..5770)
iucB N(6)-hydroxylysine O-acetyltransferase (6717..5770)
iucA (8442..6718)
iucA Aerobactin synthase IucA (8442..6718)
TF1-34_00006 (8578..9771)
TF1-34_00006 Major Facilitator Superfamily (8578..9771)
crcB (10531..10151)
crcB chromosome condensation membrane protein (10531..10151)
TF1-34_00008 (10818..10603)
TF1-34_00008 Uncharacterised protein (10818..10603)
eno (11306..10872)
eno Enolase (11306..10872)
mntB_1 (12328..11774)
mntB_1 Manganese transport system membrane protein mntB (12328..11774)
mntB_2 (12630..12310)
mntB_2 Manganese transport system membrane protein mntB (12630..12310)
mntB_3 (13484..12627)
mntB_3 Manganese transport system membrane protein mntB (13484..12627)
fhuC (14308..13481)
fhuC Iron(3+)-hydroxamate import ATP-binding protein FhuC (14308..13481)
TF1-34_00014 (15222..14308)
TF1-34_00014 Uncharacterized periplasmic iron-binding protein HI_0362 precursor (15222..14308)
TF1-34_00015 (16010..16360)
TF1-34_00015 Transposase and inactivated derivatives (16010..16360)
TF1-34_00016 (16391..16612)
TF1-34_00016 Uncharacterised protein (16391..16612)
argR (17445..16969)
argR Arginine repressor (17445..16969)
TF1-34_00018 (18932..17529)
TF1-34_00018 C4-dicarboxylate anaerobic carrier (18932..17529)
argF (19984..18980)
argF Ornithine carbamoyltransferase (19984..18980)
arcC1 (20980..20069)
arcC1 Carbamate kinase 1 (20980..20069)
arcA (22211..20991)
arcA Arginine deiminase (22211..20991)
TF1-34_00022 (23977..23525)
TF1-34_00022 replication protein (23977..23525)
TF1-34_00024 (24537..24280)
TF1-34_00024 replication protein (24537..24280)
TF1-34_00026 (25396..25214)
TF1-34_00026 Uncharacterised protein (25396..25214)
traC_1 (27834..25462)
traC_1 conjugal transfer ATP-binding protein TraC (27834..25462)
traV (28865..28350)
traV conjugal transfer protein TraV (28865..28350)
TF1-34_00029 (29113..28862)
TF1-34_00029 conjugal transfer protein TrbG (29113..28862)
TF1-34_00030 (29322..29125)
TF1-34_00030 conjugal transfer protein TrbD (29322..29125)
TF1-34_00031 (29899..29309)
TF1-34_00031 conjugal transfer protein TraP (29899..29309)
TF1-34_00032 (31316..29889)
TF1-34_00032 conjugal transfer pilus assembly protein TraB (31316..29889)
TF1-34_00033 (32044..31316)
TF1-34_00033 conjugal transfer protein TraK (32044..31316)
TF1-34_00034 (32597..32031)
TF1-34_00034 conjugal transfer pilus assembly protein TraE (32597..32031)
TF1-34_00035 (32930..32619)
TF1-34_00035 conjugal transfer pilus assembly protein TraL (32930..32619)
traA (33310..32945)
traA F-pilin (33310..32945)
traY (33702..33343)
traY Relaxosome protein TraY (33702..33343)
TF1-34_00038 (34526..33837)
TF1-34_00038 conjugal transfer transcriptional regulator TraJ (34526..33837)
traM (35096..34713)
traM Relaxosome protein TraM (35096..34713)
TF1-34_00040 (35510..36019)
TF1-34_00040 lytic transglycosylase (35510..36019)
TF1-34_00041 (37136..36315)
TF1-34_00041 Domain of uncharacterised function (DUF932) (37136..36315)
TF1-34_00042 (37541..37254)
TF1-34_00042 Uncharacterised protein (37541..37254)
hokC (38620..38462)
hokC small toxic polypeptide (38620..38462)
TF1-34_00044 (39571..38720)
TF1-34_00044 Integrase core domain (39571..38720)
TF1-34_00046 (41065..40346)
TF1-34_00046 plasmid SOS inhibition protein A (41065..40346)
psiB (41496..41062)
psiB plasmid SOS inhibition protein B (41496..41062)
ykfF (42009..41776)
ykfF Bacterial protein of uncharacterised function (DUF905) (42009..41776)
ssbF (42529..42077)
ssbF Helix-destabilizing protein (42529..42077)
ltrA (44625..42724)
ltrA Group II intron-encoded protein ltrA (44625..42724)
TF1-34_00052 (46131..45919)
TF1-34_00052 Uncharacterised protein (46131..45919)
TF1-34_00053 (46408..46157)
TF1-34_00053 Uncharacterised protein (46408..46157)
TF1-34_00054 (46722..46366)
TF1-34_00054 Uncharacterised protein (46722..46366)
TF1-34_00055 (48131..46770)
TF1-34_00055 Domain of uncharacterised function (DUF3560) (48131..46770)
TF1-34_00056 (48413..48183)
TF1-34_00056 Uncharacterised protein (48413..48183)
TF1-34_00057 (48959..49240)
TF1-34_00057 Uncharacterised protein (48959..49240)
TF1-34_00058 (49636..49445)
TF1-34_00058 Uncharacterised protein (49636..49445)
TF1-34_00059 (50055..49633)
TF1-34_00059 Uncharacterised protein (50055..49633)
TF1-34_00060 (50527..50102)
TF1-34_00060 Antirestriction protein (50527..50102)
TF1-34_00061 (51711..50941)
TF1-34_00061 Uncharacterised protein (51711..50941)
TF1-34_00062 (52190..51756)
TF1-34_00062 Protein of uncharacterised function (DUF1380) (52190..51756)
TF1-34_00063 (52425..52204)
TF1-34_00063 Uncharacterised protein (52425..52204)
yhdJ (53109..52426)
yhdJ DNA adenine methyltransferase YhdJ (53109..52426)
TF1-34_00065 (54420..53494)
TF1-34_00065 Protein of uncharacterised function (DUF1281) (54420..53494)
sopB (56105..55134)
sopB Plasmid partition protein B (56105..55134)
soj (57271..56105)
soj Sporulation initiation inhibitor protein soj (57271..56105)
repE (58614..57859)
repE replication protein (58614..57859)
TF1-34_00069 (59289..59152)
TF1-34_00069 Uncharacterised protein (59289..59152)
xerC (60142..59336)
xerC Tyrosine recombinase XerC (60142..59336)
ccdB (60448..60143)
ccdB plasmid maintenance protein CcdB (60448..60143)
ccdA (60668..60450)
ccdA plasmid maintenance protein CcdA (60668..60450)
vapB (61228..61458)
vapB Antitoxin VapB (61228..61458)
vapC (61455..61871)
vapC tRNA(fMet)-specific endonuclease VapC (61455..61871)
TF1-34_00075 (61946..63511)
TF1-34_00075 recombination protein F (61946..63511)
TF1-34_00076 (63496..64518)
TF1-34_00076 Viral (Superfamily 1) RNA helicase (63496..64518)
TF1-34_00077 (64738..64574)
TF1-34_00077 Uncharacterised protein (64738..64574)
yokD (64828..65688)
yokD SPBc2 prophage-derived aminoglycoside N(3 ')-acetyltransferase-like protein yokD (64828..65688)
tmrB (65701..66243)
tmrB Tunicamycin resistance protein (65701..66243)
TF1-34_00080 (66922..67167)
TF1-34_00080 Uncharacterised protein (66922..67167)
TF1-34_00081 (67218..68336)
TF1-34_00081 Predicted restriction endonuclease (67218..68336)
yhjK (69005..68505)
yhjK RNase II stability modulator (69005..68505)
xerD_1 (70071..69058)
xerD_1 Tyrosine recombinase XerD (70071..69058)
dhfrI (70103..70702)
dhfrI Dihydrofolate reductase type 1 (70103..70702)
ant1 (70833..71621)
ant1 Streptomycin 3''-adenylyltransferase (70833..71621)
emrE (71827..72174)
emrE Methyl viologen resistance protein C (71827..72174)
folP (72168..73007)
folP Dihydropteroate synthase (72168..73007)
TF1-34_00088 (73135..73338)
TF1-34_00088 Uncharacterised protein (73135..73338)
TF1-34_00089 (73494..74699)
TF1-34_00089 chromate transporter, chromate ion transporter (CHR) family (73494..74699)
TF1-34_00090 (74710..75015)
TF1-34_00090 lineage-specific thermal regulator protein (74710..75015)
TF1-34_00091 (75242..76006)
TF1-34_00091 Integrase core domain (75242..76006)
TF1-34_00092 (77083..76499)
TF1-34_00092 Uncharacterised protein (77083..76499)
TF1-34_00093 (78321..77083)
TF1-34_00093 Probable multidrug-efflux transporter Rv1258c/MT1297 (78321..77083)
TF1-34_00094 (79223..78318)
TF1-34_00094 Aminoglycoside phosphotransferase (79223..78318)
cat_1 (79774..79307)
cat_1 Chloramphenicol acetyltransferase (79774..79307)
bla_1 (80544..79912)
bla_1 Beta-lactamase OXA-1 precursor (80544..79912)
aacA-aphD (81472..80873)
aacA-aphD Bifunctional AAC/APH (81472..80873)
TF1-34_00098 (82678..81533)
TF1-34_00098 Transposase and inactivated derivatives (82678..81533)
TF1-34_00099 (83074..82727)
TF1-34_00099 Transposase and inactivated derivatives (83074..82727)
TF1-34_00100 (83475..83071)
TF1-34_00100 IS2 repressor TnpA (83475..83071)
traC_2 (83558..83836)
traC_2 conjugal transfer ATP-binding protein TraC (83558..83836)
TF1-34_00102 (83833..84219)
TF1-34_00102 conjugal transfer protein TrbI (83833..84219)
TF1-34_00103 (84216..84848)
TF1-34_00103 conjugal transfer pilus assembly protein TraW (84216..84848)
TF1-34_00104 (84845..85837)
TF1-34_00104 conjugal transfer pilus assembly protein TraU (84845..85837)
TF1-34_00105 (85846..86484)
TF1-34_00105 conjugal transfer pilus assembly protein TrbC (85846..86484)
TF1-34_00106 (86481..88289)
TF1-34_00106 conjugal transfer mating pair stabilization protein TraN (86481..88289)
TF1-34_00107 (88316..88573)
TF1-34_00107 conjugal transfer protein TrbE (88316..88573)
TF1-34_00108 (88566..89309)
TF1-34_00108 conjugal pilus assembly protein TraF (88566..89309)
TF1-34_00109 (89323..89664)
TF1-34_00109 conjugal transfer protein TrbA (89323..89664)
TF1-34_00110 (89980..89645)
TF1-34_00110 Uncharacterised protein (89980..89645)
traQ (90061..90345)
traQ conjugal transfer pilin chaperone TraQ (90061..90345)
TF1-34_00112 (90332..90886)
TF1-34_00112 conjugal transfer protein TrbB (90332..90886)
TF1-34_00113 (90876..91190)
TF1-34_00113 conjugal transfer protein TrbJ (90876..91190)
TF1-34_00114 (91144..91536)
TF1-34_00114 conjugal transfer protein TrbF (91144..91536)
TF1-34_00115 (91520..92896)
TF1-34_00115 conjugal transfer pilus assembly protein TraH (91520..92896)
TF1-34_00116 (92893..95718)
TF1-34_00116 conjugal transfer mating pair stabilization protein TraG (92893..95718)
TF1-34_00117 (95715..96224)
TF1-34_00117 conjugal transfer entry exclusion protein TraS (95715..96224)
TF1-34_00118 (96238..96969)
TF1-34_00118 conjugal transfer surface exclusion protein TraT (96238..96969)
traD_1 (97221..97361)
traD_1 DNA transport protein TraD (97221..97361)
traD_2 (97424..99418)
traD_2 DNA transport protein TraD (97424..99418)
traI (99418..104538)
traI Multifunctional conjugation protein TraI (99418..104538)
TF1-34_00122 (104501..105304)
TF1-34_00122 conjugal transfer pilus acetylation protein TraX (104501..105304)
finO (105359..105919)
finO Conjugal transfer repressor (105359..105919)
TF1-34_00124 (106053..106265)
TF1-34_00124 Uncharacterised protein (106053..106265)
TF1-34_00125 (106740..107387)
TF1-34_00125 IS2 repressor TnpA (106740..107387)
TF1-34_00126 (107387..107734)
TF1-34_00126 Transposase and inactivated derivatives (107387..107734)
TF1-34_00127 (107754..109325)
TF1-34_00127 Transposase and inactivated derivatives (107754..109325)
TF1-34_00128 (111527..110748)
TF1-34_00128 transposase/IS protein (111527..110748)
TF1-34_00129 (112549..111527)
TF1-34_00129 Transposase and inactivated derivatives (112549..111527)
TF1-34_00130 (113321..112563)
TF1-34_00130 Transposase and inactivated derivatives (113321..112563)
TF1-34_00131 (113580..113323)
TF1-34_00131 Transposase and inactivated derivatives (113580..113323)
TF1-34_00132 (113922..113629)
TF1-34_00132 Transposase and inactivated derivatives (113922..113629)
TF1-34_00133 (114757..114053)
TF1-34_00133 Integrase core domain (114757..114053)
TF1-34_00134 (115320..114895)
TF1-34_00134 Transposase and inactivated derivatives (115320..114895)
tetD (116332..115916)
tetD right oriC-binding transcriptional activator (116332..115916)
tetC (116345..117013)
tetC DNA-binding transcriptional regulator EnvR (116345..117013)
tetA (118331..117126)
tetA Metal-tetracycline/H(+) antiporter (118331..117126)
tetR (118413..119036)
tetR Tetracycline repressor protein class B from transposon Tn10 (118413..119036)
cmtR (119700..119014)
cmtR HTH-type transcriptional regulator CmtR (119700..119014)
TF1-34_00140 (120205..119708)
TF1-34_00140 ACT domain-containing protein (120205..119708)
TF1-34_00141 (120724..120347)
TF1-34_00141 IS1 transposase (120724..120347)
TF1-34_00142 (120796..121011)
TF1-34_00142 Uncharacterised protein (120796..121011)
cat_2 (121323..121982)
cat_2 Chloramphenicol acetyltransferase (121323..121982)
TF1-34_00144 (122560..122183)
TF1-34_00144 Acetyltransferase (GNAT) family (122560..122183)
TF1-34_00145 (125593..122627)
TF1-34_00145 Transposase and inactivated derivatives, TnpA family (125593..122627)
hin (126153..125596)
hin DNA-invertase hin (126153..125596)
bla_2 (126549..127409)
bla_2 Beta-lactamase TEM precursor (126549..127409)
TF1-34_00149 (128996..127686)
TF1-34_00149 Uncharacterized conserved protein (128996..127686)
pemK (129613..129281)
pemK mRNA interferase PemK (129613..129281)
pemI (129872..129615)
pemI Antitoxin PemI (129872..129615)
TF1-34_00152 (130618..129965)
TF1-34_00152 CAAX amino terminal protease self-immunity (130618..129965)
TF1-34_00153 (132414..131557)
TF1-34_00153 replication protein (132414..131557)
TF1-34_00155 (132973..132716)
TF1-34_00155 replication protein (132973..132716)
TF1-34_00156 (133378..134400)
TF1-34_00156 Transposase IS116/IS110/IS902 family (133378..134400)
TF1-34_00157 (134872..135225)
TF1-34_00157 Uncharacterised protein (134872..135225)
TF1-34_00158 (136021..135638)
TF1-34_00158 Protein of uncharacterised function (DUF2726) (136021..135638)
TF1-34_00159 (136231..136497)
TF1-34_00159 IS1 transposase (136231..136497)
umuC (136928..136677)
umuC DNA polymerase V subunit UmuC (136928..136677)
TF1-34_00161 (137680..137324)
TF1-34_00161 Transposase and inactivated derivatives (137680..137324)
TF1-34_00162 (137721..138017)
TF1-34_00162 Uncharacterised protein (137721..138017)
repB (138426..139403)
repB RepFIB replication protein A (138426..139403)
xerD_2 (140428..139688)
xerD_2 Tyrosine recombinase XerD (140428..139688)
TF1-34_00165 (141104..141313)
TF1-34_00165 Uncharacterised protein (141104..141313)
TF1-34_00166 (141400..142272)
TF1-34_00166 Uncharacterised protein (141400..142272)
TF1-34_00167 (142488..142601)
TF1-34_00167 Uncharacterised protein (142488..142601)
TF1-34_00168 (144350..143985)
TF1-34_00168 IS2 repressor TnpA (144350..143985)
hxuC (144632..146602)
hxuC Heme/hemopexin utilization protein C precursor (144632..146602)
TF1-34_00170 (146609..147400)
TF1-34_00170 Nickel uptake substrate-specific transmembrane region (146609..147400)
TF1-34_00171 (147880..150300)
TF1-34_00171 Transposase and inactivated derivatives, TnpA family (147880..150300)
agp (151220..150477)
agp Glucose-1-phosphatase precursor (151220..150477)
TF1-34_00173 (151827..151342)
TF1-34_00173 Sigma-70, region 4 (151827..151342)
resA (152337..151852)
resA Thiol-disulfide oxidoreductase resA (152337..151852)
lolD (153019..152324)
lolD Lipoprotein-releasing system ATP-binding protein LolD (153019..152324)
macB_1 (154154..153024)
macB_1 Macrolide export ATP-binding/permease protein MacB (154154..153024)
macB_2 (155427..154144)
macB_2 Macrolide export ATP-binding/permease protein MacB (155427..154144)
TF1-34_00178 (156809..155430)
TF1-34_00178 Predicted membrane protein (156809..155430)
tpd (157440..156913)
tpd Pathogen-specific membrane antigen (157440..156913)
efeU (159421..157481)
efeU Ferrous iron uptake protein (159421..157481)
nqrC (160475..159714)
nqrC Na(+)-translocating NADH-quinone reductase subunit C (160475..159714)
stoA (161218..160712)
stoA Stage IV sporulation protein H (161218..160712)
TF1-34_00183 (161366..161208)
TF1-34_00183 Protein-disulfide isomerase (161366..161208)
TF1-34_00185 (163810..161786)
TF1-34_00185 Transposase and inactivated derivatives, TnpA family (163810..161786)
TF1-34_00186 (164115..163942)
TF1-34_00186 Uncharacterised protein (164115..163942)
TF1-34_00187 (164435..164115)
TF1-34_00187 Uncharacterised protein (164435..164115)
bla_3 (165324..164449)
bla_3 Beta-lactamase CTX-M-1 precursor (165324..164449)
TF1-34_00189 (165599..165477)
TF1-34_00189 Uncharacterised protein (165599..165477)
TF1-34_00190 (166842..165580)
TF1-34_00190 Transposase DDE domain (166842..165580)